Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152089g00003 ATGTGTGGGACAACGGGGGTGGGCTATTGCCACGAACTGACTGCAGTTTGTCGAGACATTAGGCGAACTGCGGCCATGGTCATAGTTCGCCGCATCACTAGGAGAATAGAGGGTGAAAATGAGGATATATCAGCAGCAGCAGGAGAAAGTAGAACAGCACCAAGAGTTGTTATTCAGACAAGAAGTGAGATTGATATTCTAGATGATGGCTATAGATGGAGGAAATATGGCCAGAAAGTTGTCAAGGGAAATCTAAATCCAAGGAGTTACTACAAATGCACAAGCCTAGGGTGTCCTGTGAGAAAGCACATAGAGAGAGCCTCAAATGACAGAAGTGCAGTGATCACAACTTATGAAGGAAAGCACACCCATGAAGTCCCTCCGGCACGTGCTACCCATTCTCTTATCAATAAACCGCACGTGCCACGAGATACCACAAACAACACCCCCGCCAACACCAACAATTCTCTTCAAGCTTCCATAAGACCTAATGAAGGGCAATCAAGTAATTTCAACATAGGTATGACTATGAGGCATAATCCAATGGAGTCTTACATGATGAATAACCAAGCAAAGGAAGAACCTAGAGATGATTATTACTCTTTTCTTGAATCATTGCTATAG 624 0.4391 MCGTTGVGYCHELTAVCRDIRRTAAMVIVRRITRRIEGENEDISAAAGESRTAPRVVIQTRSEIDILDDGYRWRKYGQKVVKGNLNPRSYYKCTSLGCPVRKHIERASNDRSAVITTYEGKHTHEVPPARATHSLINKPHVPRDTTNNTPANTNNSLQASIRPNEGQSSNFNIGMTMRHNPMESYMMNNQAKEEPRDDYYSFLESLL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152089g00003 207 MobiDBLite consensus disorder prediction 137 170 - -
Stsc152089g00003 207 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 51 158 IPR044810 GO:0003700
Stsc152089g00003 207 SMART WRKY_cls 67 126 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00003 207 Pfam WRKY DNA -binding domain 68 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00003 207 Gene3D WRKY domain 52 128 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00003 207 FunFam WRKY transcription factor 57 53 127 - -
Stsc152089g00003 207 SUPERFAMILY WRKY DNA-binding domain 59 127 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00003 207 ProSiteProfiles WRKY domain profile. 62 127 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00003 207 MobiDBLite consensus disorder prediction 139 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152089g00003 Stsc-Chr152089 8780 10121 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152089g00003 34 146 WRKY Transcription Factor Family AT2G38470 63.478 3.10e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc152089g00003 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152089g00003 K13424 - rcu:8273025 185.652