Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152089g00001 CATGAGGCATGTGGAATCAGTGTGGTGAAGGCTGAGAACTTATCATTGTCATCAATTCAAAACTTCAAGAATGAGATCTTTTCTGTCCAAAATAACAAGGATTTTCAATCAAATTATGATCATCATCTTCATCCAAAGGTACAAATCTTAAGTAGAAGATCAGACGATGGTTACAATTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGGAGTGAAAATCCTAGAAGTTATTACAAATGCTCATACCCTAATTGCCCTACAAAGAAGAAGGTTGAGAGATCTTTGTTAGATGGACAAATAACTCAGATAATTTACAAAGGCATCCATAACCATCCAAAGCCTAAATCTATTAGGGGAAACTTGTCATCTTTTGTATCTTCGTTAGAAGTTCCTTCTTCATCAGATCATGAGATACAACATGAAATTATTAATGGAAGAATGGATACTGTTGTCAACCCAGGAGAGTCATCATTATCTATGGATGAGGTTGAAAAGACTAAAACAGGAGCTAATGATTTTAATGAGGATGAACCTAATGCCAAGAGATGGTGA 552 0.3569 HEACGISVVKAENLSLSSIQNFKNEIFSVQNNKDFQSNYDHHLHPKVQILSRRSDDGYNWRKYGQKQVKGSENPRSYYKCSYPNCPTKKKVERSLLDGQITQIIYKGIHNHPKPKSIRGNLSSFVSSLEVPSSSDHEIQHEIINGRMDTVVNPGESSLSMDEVEKTKTGANDFNEDEPNAKRW 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152089g00001 183 FunFam WRKY transcription factor 40 115 - -
Stsc152089g00001 183 Pfam WRKY DNA -binding domain 55 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00001 183 MobiDBLite consensus disorder prediction 149 183 - -
Stsc152089g00001 183 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 182 IPR044810 GO:0003700
Stsc152089g00001 183 SMART WRKY_cls 54 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00001 183 ProSiteProfiles WRKY domain profile. 55 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00001 183 Gene3D WRKY domain 31 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc152089g00001 183 MobiDBLite consensus disorder prediction 160 183 - -
Stsc152089g00001 183 SUPERFAMILY WRKY DNA-binding domain 52 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152089g00001 Stsc-Chr152089 1039 1590 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152089g00001 46 183 WRKY Transcription Factor Family AT5G07100 46.429 2.54e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc152089g00001 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152089g00001 K13424 - qsa:O6P43_014117 197.593