Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152085g00001 ATGAGGGTTGAGAGAGGGAAACACGGTGAGGTTTCCGGCTATGTCGGAAGAAGTCATAATGGGGAGAGTTTGGAGGGGGGGGGGTTTGCATTAGGAGTAAGGAGGAACAGTAACAAGGGTTATTGGTGGAGAGTGGGAACAGACGTAAAGACCACAGTATTCGTTGATAACTTGCCAGAAGATGTGGCCAAGAGGGACATGTATAAAGAATTTGGGAGAGACAGCTACATAACAGACATCTTTGTTTCAAGAAAGCAGAGATTGAGGGTGAAGGGTCCTTTTGCGTTTGTTAGGTTCCAACGATTTGAAGGTGCTCTGAGGGCTATCAATAGGCTAAATGGATACTTATGGAAGGGAAGGGAACTTACCGTAACCATGCCTAAGTTCACGAGACATGGGAAAGATCAGAGGGAAGCACAACGTGGCGTTACTCAGAAGGGGTCAAATCTAAAAATTACGAAGAAATGGGTGGAAGTAAGAAGGAACGTTGCCAAGGAAGGAGACAGGATGGAGAGGAGTGTTGAGAATGCGATGGATACACTGAAAAGAAGGAAAGAGGTAGATGTTTTTTGGGCCGCCGAGCAGAAGGACCTGCTGAGCAGAAGCTTGTTTGGCTACTCTGTCAAACCAATTGACTTCAGAAAAACGATGAACTTTCTGCTATATGTTTATTTCGATGATTTTCTGTTTTTAGCGACTGTACACCTTTGGCGACGGTTTAACCGTTTTGGCCGTCTTTAG 741 0.4521 MRVERGKHGEVSGYVGRSHNGESLEGGGFALGVRRNSNKGYWWRVGTDVKTTVFVDNLPEDVAKRDMYKEFGRDSYITDIFVSRKQRLRVKGPFAFVRFQRFEGALRAINRLNGYLWKGRELTVTMPKFTRHGKDQREAQRGVTQKGSNLKITKKWVEVRRNVAKEGDRMERSVENAMDTLKRRKEVDVFWAAEQKDLLSRSLFGYSVKPIDFRKTMNFLLYVYFDDFLFLATVHLWRRFNRFGRL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152085g00001 246 CDD RRM_SF 53 124 - -
Stsc152085g00001 246 Gene3D - 34 173 IPR012677 -
Stsc152085g00001 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Stsc152085g00001 246 SUPERFAMILY RNA-binding domain, RBD 50 128 IPR035979 GO:0003676
Stsc152085g00001 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Stsc152085g00001 246 SMART rrm1_1 52 125 IPR000504 GO:0003723
Stsc152085g00001 246 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 50 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152085g00001 Stsc-Chr152085 1906 2646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152085g00001 45 115 Eukaryotic Initiation Factors Gene Family AT3G11400 38.158 1.51e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152085g00001 K12891 - ahf:112794598 95.9005