Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152080g00001 ATGGCAATGGATCGGGTCAGGACAGATAATGATAATTACCAGAACAAGGCGAGGGGAGCCCCACAAACAGATGCTAAAATATTAAATAAAGAAGGCAATAATAAAGACACAGGGAGCCATAACATTGCTGCACAAACATTCACTTTTCGTGAATTAGCTGCTATTACAAAGAACTTTAGGCAAGAGTTCCTAATAGGGGAAGGTGGATTTGGAAGGGTTTACAGAGGACGACTTGAAAAGACAAACCAAGAAGTAGCTGTAAAACAACTTGACAGGAATGGATTGCAAGGGAACAGAGAGTTTCTTGTTGAAGTGTTAATGTTAAGTTTGTTACACCATGAGAATCTAGTAAATCTAATTGGATATTGTGCTGATGGAGATCAAAGACTATTAGTGTATGAGTATATGGCATTGGGATCTCTTGAGGATCATCTACTAGATATTCATCCCCAACAAAAGGCATTAGATTGGTTCAAAAGAATGAAAATAGCATTACATGCTGCAAAAGGGCTAGAATACCTACATGACAAAGCCAATCCACCAGTTATCTACCGTGACTTAAAATCTTCAAATATTTTGCTGGATAGGGATTACAATGCAAAACTCTCCGATTTTGGACTCGCGAAGCTCGGACCTACCGGGGACAAGACTCATGTGTCTTCCAGAGTGATGGGAACTTATGGATACTGCGCTCCGGAATATCAAAGAACTGGGCAACTTACTGTAAAATCTGATGTCTATAGTTTCGGCGTTGTGTTGCTTGAATTGATCACCGGAAGGAGAGCCATTGATAATACTAGACATACAAGGGAGCAAACTCTAGTTACTTGGGCAAATCCAGTGTTCAAGGAGCCAAACAGGTACCCAGAACTAGCAGACCCCCTTCTAGAAGGAAAGTACCCATTGAGATCATTACACCAAGCAGTGGCAGTAGCAGCCATGTGCCTTAATGAAGAACCAGAAGTGAGGCCATTAATCAGTGATGTTGTAACTGCCCTCAGCTTCTTACCATTAGACCAAGATGGTAATAATAATAATATTATTATTTCACCAATTGAAACGCCTTCTCCACCACCTGTTACTTTTAATTTAATGGATGATGATAGCATTGCTGAGCGACAAAGAGCCGTTGCTGACGCCATTGAATGGGTTTCTAATAATAACACAAGGAAATAA 1176 0.4039 MAMDRVRTDNDNYQNKARGAPQTDAKILNKEGNNKDTGSHNIAAQTFTFRELAAITKNFRQEFLIGEGGFGRVYRGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHENLVNLIGYCADGDQRLLVYEYMALGSLEDHLLDIHPQQKALDWFKRMKIALHAAKGLEYLHDKANPPVIYRDLKSSNILLDRDYNAKLSDFGLAKLGPTGDKTHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRHTREQTLVTWANPVFKEPNRYPELADPLLEGKYPLRSLHQAVAVAAMCLNEEPEVRPLISDVVTALSFLPLDQDGNNNNIIISPIETPSPPPVTFNLMDDDSIAERQRAVADAIEWVSNNNTRK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152080g00001 391 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Stsc152080g00001 391 SUPERFAMILY Protein kinase-like (PK-like) 45 358 IPR011009 -
Stsc152080g00001 391 FunFam Serine/threonine-protein kinase PBS1 136 350 - -
Stsc152080g00001 391 ProSiteProfiles Protein kinase domain profile. 59 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152080g00001 391 FunFam Serine/threonine-protein kinase PBS1 31 135 - -
Stsc152080g00001 391 MobiDBLite consensus disorder prediction 1 39 - -
Stsc152080g00001 391 CDD STKc_IRAK 65 333 - -
Stsc152080g00001 391 SMART serkin_6 59 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152080g00001 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Stsc152080g00001 391 Gene3D Transferase(Phosphotransferase) domain 1 136 348 - -
Stsc152080g00001 391 PANTHER OS07G0668900 PROTEIN 22 340 - -
Stsc152080g00001 391 Gene3D Phosphorylase Kinase; domain 1 29 135 - -
Stsc152080g00001 391 Pfam Protein kinase domain 62 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152080g00001 Stsc-Chr152080 3618 9293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152080g00001 26 383 Glycoside Hydrolase AT3G07070 72.022 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc152080g00001 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152080g00001 - - gmx:100786405 605.905