Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152079g00001 ATGGCATCTTCAAATTCGCCATGCGCAGCATGCAAATTTCTTCGAAGAAAATGCCAACCAGAGTGCGCTTTTGCACCATACTTTCCACCGGATCAGCCTCAGAAGTTCGCGAATGTTCATAGAATCTTTGGTGCAAGCAATGTCACAAAGCTTCTCAACGATTTACACCCTCACCAGCGCGAAGACGCCGTCAATTCCCTCGCCTACGAGGCGGAGATGCGCCTCCGCGACCCCGTATACGGTTGCGTGGGCGTTATCTCTCTCCTCCAGCACCAGCTCCGGCAGCTCCAGATGGACCTTTACTGCGCTAAATCAGAGCTATCTCGGTACCAAAGTTTGAGTGTTAACGCCCACCACCACGCTCTTATTGGTGGTGAATCTGCTGTCGTGGGATACCAGCACCAGAATCAAAATAATAATAACTCTGCTGGTGCTGGAACCCGCGACAGCAGTAATCACTACCAACAAAGTAGTAATCACCACCACCACCAATTCTTTCCGCAGCAGCAGATAGTAAGAAGTTTTGATGGAGGGAACAATTATGACGCGAGTCTCTTGGCTATGAACATCTCCGCTAGCTTAGGGCAGCTCAATCAGATTCAGCAGCATAGCGCGGCCGGTGGCGGTGATGACCGCCGCACCGTCAACAACCCTTCCTAA 660 0.5121 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQSLSVNAHHHALIGGESAVVGYQHQNQNNNNSAGAGTRDSSNHYQQSSNHHHHQFFPQQQIVRSFDGGNNYDASLLAMNISASLGQLNQIQQHSAAGGGDDRRTVNNPS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152079g00001 219 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Stsc152079g00001 219 MobiDBLite consensus disorder prediction 135 163 - -
Stsc152079g00001 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 157 - -
Stsc152079g00001 219 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152079g00001 Stsc-Chr152079 5307 5966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152079g00001 2 216 AS2 family AT1G65620 63.134 1.05e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc152079g00001 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152079g00001 - - gmx:100819502 330.872