Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152072g00004 ATGGCGTTTTGGTGGCCATTGCTTGTCTTAGCATTCGCTTACGGACTCTGCAGGTTTCTTTTCATGCTTATTCCTCCAAAGGTTCCTTCCATCGATGTTGAAACTTCCGACGTGTTGGATGATGGAAACCAAGCGCAGGAGAATAGCTTCATATATGTTCCTCCGAGAGGAACGTCGCAGCAATCTGGAAAGATAGTTCAGTGCTATGAGCCTGCAACTATGAAATATTTGGGATATGTTCCGGCATTGACGCGTGATGAGGTTAAGGATCGCGTGGCAAAAGTAAGAAAGGCTCAAAAAATGTGGGCAAAGACCAGCTTCAAGCAAAGACGCACGTTTTTGCGTATACTTTTGAATTATATAATCAAGCATCAAGCACTCATATGCGAAATATCTTCGCGTGATACTGGAAAGACCATGATAGATGCCTCTTTAGGAGAAATAATGACAACTTGTGAGAAGATCAATTGGCTACTGTCAGAGGGCGAACAGTGGCTAAAGCCTGAATACCGGTCTTCTGGAAGAGCAATGCTTCACAAGAGAGCAAAAGTAGAATTCCACCCCCTTGGTGTTATTGGTGCCATCGTTTCATGGAATTATCCTTTCCNNNNNNNNNNTTCTGGAAATGGCATTGTGATTAAGATATCAGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGGATCATCCAATCTGCCCTTGCTGCAATAGGAGCTCCAGAGGACCTTGTTGAGGTCATAACAGGATTTGCTGAAACTGGAGAAGCTTTGGTATCTTCTGTTGATAAAGTCATATTTGTTGGATCGCCTGGTGTGGGGAAGATGATAATGAGAAATGCTGCTGAGACACTTATACCAGTTACGCTAGAGCTTGGTGGAAAAGATGTATTTGTTGTTTGTGATGATGTAGACGTGGACAATGTTGCGCAAATTGCTGTCAGGGCTGTTCTTCAATCAAGTGGACAGAACTGTGCTGGGGCTGAGAGATTTTATGTCCACAGAGACATTTACTCTTCTTTTGTCAGTAAAGTTACCAAAATCATAAAATCAATTAGAGCTGGCCCACCACTTGCTGGAAAGTATGATATGGGAGCTTTATGCATGCATGAGCATTCTGAAAAACTTGAAGGCCTTATCAATGATGCTTTAGACAAAGGAGCTGAGATTGTTGCTCGTGGAAGTTTTGGACATATAGGTGAAGATGCTGTTGATCAATATTTTCCCCCTACTGTGATTGTGAATGTGAACCACTCAATGAGATTGATGCAAGAAGAGGCATTTGGACCAATCATGCCAATAATGAAATTTAGCTCTGACGAGGAGGTTGTCAAGCTTGCAAATGACTCAAAATATGGGCTTGGCTGCGCTGTTTTCTCAGGTTCTCAGGACCGTGCCAGAGATATAGCTTCACAAATACATTGTGGGGTTGCTGCCGTTAATGACTTTGCATCAACGTACATGTGTCAGTCCCTGCCCTTTGGGGGCGTGAAGCATAGTGGATTTGGACGATTCGGTGGTGTAGAAGGTCTGCGAGCCTGCTGTCTTGTCAAGGCAGTTGTGGAAGATAGATGGTGGCCATTTGTTAAAACCAAGATACCTAAACCTATTCAGTATCCTGTTGCAGAGAATGGATTCGAATTTCAGGAATCACTTGTGGAAGCACTTTATGGACTCAACATATGGGAACGTTTGCAAGCATTAGTAAACATTTTGAAGATGCTTACTGAGCAGAACCCTGCCGGTGAAAGCACTAAGAAGAAAAATGAATGA 1770 0.4288 MAFWWPLLVLAFAYGLCRFLFMLIPPKVPSIDVETSDVLDDGNQAQENSFIYVPPRGTSQQSGKIVQCYEPATMKYLGYVPALTRDEVKDRVAKVRKAQKMWAKTSFKQRRTFLRILLNYIIKHQALICEISSRDTGKTMIDASLGEIMTTCEKINWLLSEGEQWLKPEYRSSGRAMLHKRAKVEFHPLGVIGAIVSWNYPFXXXXSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMRNAAETLIPVTLELGGKDVFVVCDDVDVDNVAQIAVRAVLQSSGQNCAGAERFYVHRDIYSSFVSKVTKIIKSIRAGPPLAGKYDMGALCMHEHSEKLEGLINDALDKGAEIVARGSFGHIGEDAVDQYFPPTVIVNVNHSMRLMQEEAFGPIMPIMKFSSDEEVVKLANDSKYGLGCAVFSGSQDRARDIASQIHCGVAAVNDFASTYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKAVVEDRWWPFVKTKIPKPIQYPVAENGFEFQESLVEALYGLNIWERLQALVNILKMLTEQNPAGESTKKKNE 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152072g00004 589 Pfam Aldehyde dehydrogenase family 60 519 IPR015590 GO:0016491
Stsc152072g00004 589 SUPERFAMILY ALDH-like 60 521 IPR016161 GO:0016491
Stsc152072g00004 589 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 517 IPR016162 GO:0016491
Stsc152072g00004 589 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 317 328 IPR016160 GO:0016491
Stsc152072g00004 589 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 289 296 IPR029510 GO:0016491
Stsc152072g00004 589 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 59 519 - -
Stsc152072g00004 589 FunFam aldehyde dehydrogenase 22A1 65 311 - -
Stsc152072g00004 589 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 297 492 IPR016163 GO:0016620
Stsc152072g00004 589 FunFam Aldehyde dehydrogenase 22A1 297 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152072g00004 Stsc-Chr152072 7828 13789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152072g00004 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 76.174 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152072g00004 - - gmx:100802990 1102.04