Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152065g00004 ATGAGAGGGAGAGAGGGTGTGAGGTGGGTTACGAGAGGTGAGAGAGGGAAACACGGTGAGGTCTCCAGCTTTGCCGGAGGGAGACATAAGGGGGAGAGCGTGGGAGGGTTTGAACCAGGTGTCAGGAGGAATTTTGGGTGGGGTGTGTACAAAAACACTGTTAGCTGTCCACAATGGTGTAGAGGATTGAAACCTACCAATAAATCATATATGGTTTTCATTGATAATCTACCATTGGATGTCATCAAGGGAGCACTCTACAAAGAGTTTGGCAAAGATGGTTTTATATCGGACGTCTTCATCTCTAGGAAGGAAAGGAGGAACTCAACGGGCACCTTTGCATTCATAAGATTCAATTCCTATGGTGGATCACGTAAAGCCATACAGAGGTTGAATGGAACCAGATGGGGGGAAGCAAACCTTGTAGTTGGACTGCCTAAATACTACAGAGGAAATGGAGGGACTATTGCAAGAAGTAAATTTAGGTTCCAACCGCTGGTGGCTCAGAGCAGAACACAAAGGTGGGTTGAAGTTAAAAAGCCAAATAAAGAAGAATCGAAGAATGATGTCTCCAAACCAGGGGGTATGCCAATTCTTGATAACCGTGTGAAAGAAGTCCAACTCTCCTGGGAAGAAGATCAGAAACTGAGGCTACAGAGGAGCTTACTTGGAGTATCTGTAAAACCCATTGACTTCAGGAAAGTTATGGATTATTTACAAGAAAACTGGAAGGGTGCCGGAACGTTTGAGTCTCAGGAAATCAGGGACGAAGCGATGCAAAGTGAGTTGCTGTGGTCTTCGTTTGATGAAATTAGAATCCATTGGGAGGTTTTCTGGTGCCTCTCTAGGAGGGTTTGGATTGAGGTTTCGCGAATGCCAGTTTGCTTATGGAGCAAAGAAATTTTTTCCAGGATAGCAGAACTATGGGGAAAAGTAATTGAATTCGATGACAGAGCGGCGGAATCTAGTCATATAGCACGGCGAGAGTTCTGA 993 0.4502 MRGREGVRWVTRGERGKHGEVSSFAGGRHKGESVGGFEPGVRRNFGWGVYKNTVSCPQWCRGLKPTNKSYMVFIDNLPLDVIKGALYKEFGKDGFISDVFISRKERRNSTGTFAFIRFNSYGGSRKAIQRLNGTRWGEANLVVGLPKYYRGNGGTIARSKFRFQPLVAQSRTQRWVEVKKPNKEESKNDVSKPGGMPILDNRVKEVQLSWEEDQKLRLQRSLLGVSVKPIDFRKVMDYLQENWKGAGTFESQEIRDEAMQSELLWSSFDEIRIHWEVFWCLSRRVWIEVSRMPVCLWSKEIFSRIAELWGKVIEFDDRAAESSHIARREF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152065g00004 330 SUPERFAMILY RNA-binding domain, RBD 65 148 IPR035979 GO:0003676
Stsc152065g00004 330 CDD RRM_SF 72 143 - -
Stsc152065g00004 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 136 IPR000504 GO:0003723
Stsc152065g00004 330 SMART rrm1_1 71 144 IPR000504 GO:0003723
Stsc152065g00004 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Stsc152065g00004 330 Gene3D - 62 191 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152065g00004 Stsc-Chr152065 6544 7536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152065g00004 65 144 Eukaryotic Initiation Factors Gene Family AT1G22760 33.750 5.75e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152065g00004 - K13126 ahf:112794598 128.642