Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152061g00002 ATGTTCTATGCTTTCTATGAAGCTCAGAGCTCTACCTTACCTCTCTCCAAAACCCCACTTCTCATTTGGCTCAGTGGTGGCCCTGGCAGCTCCTCCATGACTACCAACCTCAATGCGGTTGGTCCATGGCTTCTCACAGAATCCCTCACTCTTGAACCCAACCCTGGTGCTTGGAACAAGTTATTTGGCCTTCTCTTTCTAGATAACCCCATTGGTACTGGATTCAGTATAGCCTCATCGCCGCAAGAAATCCCAACAGATCTAGAAGGTGTTGCCAAACACCTTTATGTTGCAATTACAAGGTTTCTTCGACTTGATCCTGTTTACAAACACCGCCCTATTTATATCGTTGGGCAAAGCTATGGCGGAAGGTATCCCACTACAACTGCAAATTTTATATTGAAAAGAAATGCAGAGTTGCATCCTTCTCAAAGAATGAATTTGGTTGGTGTGGCTATTGGGGATGGGTTAATTGAGCCTCTGACCCAAATTGCCACCATACCTACCAATGCTTATTACGTGGGTTTGATCAATGAGAAGCAAAAGAGTGAGTTGGAGAAAGATGAATTGGAGGTAGTTAGGTTGACGCAGATTCAGAATTGGAATGAAGCAGATACTGAATGGACTAGCGTCAAGGAGCAGATTCAAAACATGGTAGGGTGGGATTCTTTGTCTGACTTCACACTGAGAGGTAATCTTGTTAACTATCTAGCTTGGGATACTCAATTCTTGAACATGGCTGAGGTGAAGAAGGCACTGGGAGTGAACCAATCTTTCGTGTTTGAACCTAAGAGCAGTGAGGTAAGGACAGCGTTGCAGGCTGATATCATGAAGAGTGTCAAGTTTAGGGTAGAGGAGTTGTTGAGGATCAACACTACTAGGGTGTTGCTATACCAAGGTCAATATGATTTGCTTGCTGGTCCAGTTCAAACTGACGCGTGGGTGAAGACTATGAAATGGGAAGGGCTTGAGGATTTTCAGAATGCAGAGAGGAAGATATGGAAGGTGAATGGAGAGCTTGCTGGTTATGTCCAACAATGGGAGTCACTCACCAGTGTTGTGGTGTTAGGAGCTGGCCATGCTGTGCCTCTTGGCCAGCCTGTTAATGCTCAGGCAATGATACAAGATTGGGTCTTGCAAAGGGGTACTTTTGGAAATTTGCCTTCTTTTAGTTCCATTTGA 1182 0.4475 MFYAFYEAQSSTLPLSKTPLLIWLSGGPGSSSMTTNLNAVGPWLLTESLTLEPNPGAWNKLFGLLFLDNPIGTGFSIASSPQEIPTDLEGVAKHLYVAITRFLRLDPVYKHRPIYIVGQSYGGRYPTTTANFILKRNAELHPSQRMNLVGVAIGDGLIEPLTQIATIPTNAYYVGLINEKQKSELEKDELEVVRLTQIQNWNEADTEWTSVKEQIQNMVGWDSLSDFTLRGNLVNYLAWDTQFLNMAEVKKALGVNQSFVFEPKSSEVRTALQADIMKSVKFRVEELLRINTTRVLLYQGQYDLLAGPVQTDAWVKTMKWEGLEDFQNAERKIWKVNGELAGYVQQWESLTSVVVLGAGHAVPLGQPVNAQAMIQDWVLQRGTFGNLPSFSSI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152061g00002 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 350 363 IPR001563 GO:0004185|GO:0006508
Stsc152061g00002 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 102 127 IPR001563 GO:0004185|GO:0006508
Stsc152061g00002 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 54 66 IPR001563 GO:0004185|GO:0006508
Stsc152061g00002 393 PRINTS Carboxypeptidase C serine protease (S10) family signature 67 77 IPR001563 GO:0004185|GO:0006508
Stsc152061g00002 393 SUPERFAMILY alpha/beta-Hydrolases 1 378 IPR029058 -
Stsc152061g00002 393 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 367 IPR001563 GO:0004185|GO:0006508
Stsc152061g00002 393 Coils Coil 178 198 - -
Stsc152061g00002 393 Pfam Serine carboxypeptidase 1 378 IPR001563 GO:0004185|GO:0006508
Stsc152061g00002 393 ProSitePatterns Serine carboxypeptidases, histidine active site. 350 367 IPR033124 GO:0004185
Stsc152061g00002 393 Gene3D alpha/beta hydrolase 1 384 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152061g00002 Stsc-Chr152061 14856 16037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152061g00002 236 378 Calmodulin-binding Proteins AT2G22960 22.222 3.15e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152061g00002 K09645 - gmx:100780822 498.434