Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152059g00002 ATGCTTTCAGGATTACTGACTCATTCCATTGGTTCGCTGAACGAATTAACAAAACTCTACCTTGGAAAGAACCAAATCAATGGAAGAATCCCTTCAGAGATTCTCTCTTGTTCTAAGCTACAACTTCTTGATCTGGGAAGCAACCGTTTGGCAGGCGAAATCCCAAAAGAACTCGGCCTACTTTCATCACTTGAAATCTCGCTGAATCTCAGCCATAACCAATTCTCCGGCGAGATTCCTTCCGAGTTTTCGAGCCTCGGAAAGCTAGGAGTCCTTGATCTGTCCCACAACAAGCTCACAGGGAACTTAGATGCTCTTTCTAGCCTTCAAAACCTTGTTTCCTTGAATGTCTCCTTCAATGGCTTCTCTGGTGAATTACCAAACACACCATTCTTCCATAAGCTCCCTCTAAGTGATCTCGCCGAAAATCAAGGTCTCTATATTACCGCTATAAACTCTTCTGACAAAACACAGTCAGAGAGTCACAAAAAATCAGTTATGAAGTTAGTTATGTCAATTCTCCTAAGCACTAGTGTAGCACTGGTGCTGCTAACGGTCTACGTCCTGATCCGTTCGCACATCGCGAACGAATCTCGGGCGCAGGCCGATAGCTGGGAGATGACATTATATCAAAAGTTTGATCTGTCCATTGACGAAATTGTCATGAATTTGACCTCCTCCAACGTGATCGGAACGGGAAGCTCTGGCGTGGTGTACAAGGTAAGTATCCCAAACGGCGAAATACTAGCCGTTAAGAAGATGTGGTTGTTAACGTCATCAGAAGAATCTAGAGCGTTCGAGAACGAGATTGGAACGCTTGGTTCGATTAGGCACAAGAATATCATAAGGCTTCTTGGTTGGGGATCCAACAGGAACTTGAAGCTTCTATTCTATGATTATCTCCCTAATGGAAGCTTGAGTTCGTTGCTTCATGGTTCAGGGAAGGGAAAAGCTGAATGGGAAACGAGATACGATGTTATTTTGGGTGTAGCTCATGCACTTTCGTATTTGCACCATGATTGTGTTCCTTCTATAATCCATGGAGATGTTAAGGCCATGAATGTGTTGTTAGGACCTGGATTTCAACCTTACCTTGCTGATTTCGGTCTTGCAAGAATTGCTACTGGAAATGGTGGTGGTGGTGGTGGTGATGACACTGAAAATTCTATGCAAGGTCAAAGACACTACCTTGCTGGTTCATATGGATACATGGCTCCTGAGCATGCATCAATGCAACCCATAACAGAGAAAAGTGATGTATACAGTTATGGTATAGTTGTACTTGAGGTTCTAACAGGAAGTCACCCATTAGACCCAACTCTACCAATGGGTGCACCCTTGGTCCAATGGGTTAGGAACCACTTAGCCAACAAAGGTGACCCATCAGACATCCTTGACTCAAAGCTCAAAGGGAGATCTGACCCTACCATGCATGAGATGCTACAAACTTTGGCTGTCTCATTTCTTTGTGTTAGCACAAAAGCTTCTGATAGGCCAACAATGAAGGATGTTGTTGCAATGTTGAAGGAAATTAAGCCTATTGAGTCTTCAAGGGTTGACCATGATGTGCTCAAGAAAGGAGGTTTGACCTCAGCATCACATAGTTCTTCAACCACAATTAAATCACCATCACCACCTCCTAGGAATAATGCTGTTGTTACTCATGGATCTTCTAATTGTTCCTATAATTTCTCCGATGAGTCAAACAGTTAA 1713 0.4332 MLSGLLTHSIGSLNELTKLYLGKNQINGRIPSEILSCSKLQLLDLGSNRLAGEIPKELGLLSSLEISLNLSHNQFSGEIPSEFSSLGKLGVLDLSHNKLTGNLDALSSLQNLVSLNVSFNGFSGELPNTPFFHKLPLSDLAENQGLYITAINSSDKTQSESHKKSVMKLVMSILLSTSVALVLLTVYVLIRSHIANESRAQADSWEMTLYQKFDLSIDEIVMNLTSSNVIGTGSSGVVYKVSIPNGEILAVKKMWLLTSSEESRAFENEIGTLGSIRHKNIIRLLGWGSNRNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALSYLHHDCVPSIIHGDVKAMNVLLGPGFQPYLADFGLARIATGNGGGGGGDDTENSMQGQRHYLAGSYGYMAPEHASMQPITEKSDVYSYGIVVLEVLTGSHPLDPTLPMGAPLVQWVRNHLANKGDPSDILDSKLKGRSDPTMHEMLQTLAVSFLCVSTKASDRPTMKDVVAMLKEIKPIESSRVDHDVLKKGGLTSASHSSSTTIKSPSPPPRNNAVVTHGSSNCSYNFSDESNS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152059g00002 570 SUPERFAMILY L domain-like 2 148 - -
Stsc152059g00002 570 Gene3D Phosphorylase Kinase; domain 1 188 300 - -
Stsc152059g00002 570 SUPERFAMILY Protein kinase-like (PK-like) 222 508 IPR011009 -
Stsc152059g00002 570 Gene3D Ribonuclease Inhibitor 1 178 IPR032675 -
Stsc152059g00002 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Stsc152059g00002 570 Pfam Protein kinase domain 227 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152059g00002 570 ProSiteProfiles Protein kinase domain profile. 224 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152059g00002 570 Gene3D Transferase(Phosphotransferase) domain 1 301 527 - -
Stsc152059g00002 570 SMART serkin_6 224 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc152059g00002 570 ProSitePatterns Protein kinases ATP-binding region signature. 230 253 IPR017441 GO:0005524
Stsc152059g00002 570 PANTHER LEUCINE RICH REPEAT KINASE 2 2 517 - -
Stsc152059g00002 570 MobiDBLite consensus disorder prediction 527 570 - -
Stsc152059g00002 570 ProSiteProfiles Leucine-rich repeat profile. 88 110 IPR001611 GO:0005515
Stsc152059g00002 570 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 193 300 - -
Stsc152059g00002 570 MobiDBLite consensus disorder prediction 529 570 - -
Stsc152059g00002 570 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 301 526 - -
Stsc152059g00002 570 FunFam Putative LRR receptor-like serine/threonine-protein kinase 67 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152059g00002 Stsc-Chr152059 12347 16670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152059g00002 2 568 Receptor kinase-like Gene Family AT5G56040 64.561 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc152059g00002 Pkinase 6.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152059g00002 - - psat:127084696 836.639