Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152059g00001 ATGGATGAAGGAGCAAAAGCATTGCTCCCAAAAGAACCTTCAGAAGAAGAATTCCGGAATGCACTTCGGAATGGCCTCATTCTCTGCAATGTCCTCAACAAGGTCCATCCTGGTGCTGTTTTCAAAGTGGTGGAGAATGGTGGGGTTGCGGCGCTTCCAAGTGCAGAGGGAGCAGCTCACTCTGCAATTCAATATTTTGAGAATGTCAGAAACTTTTTGGAAGCTGTCAAGGATTTGCACCTCCTCACTTTTGAAGCTTCTGATTTGGAGAAGGGTGGTTCATCAAACAAAGTTGTAGACTGCATTCTATGCCTAAAAGGGTACTATGAATGGAAGTTATCTGGTGGAGAAGGAGTATGGAAGTATGGTGGGACTGTGAGGATCACTTCACTTCCAAAGAGGTCTTCTCCTTCTTCATTATCATCCACAATTGGAAGTGATCAAAGTGCTGATGATCATCAATCATTGTTGGATGAACAAGAGGCATCACAATATGAACAACTCTTAGAATTTCTTCAACTCTCTCAAGAGTTCTTGATTGAAGAATCTAGAACTGCAAACACTCTCTCTTTCCTTTTTGATCACTTTGGACTCAGGCTTCTTCAGGCATACCTTAGAGAATCTGATCACATTCAAGATCTTCCTTTGAATGCAATGGTAATTGATACACTGCTTAACAAGGTCGTCAAGGATTTCTCATCCTTGCTTGCTTCCCAAGGCACTCAGCTTGGACTTTTCCTGAAGAAGATATTGAAAGGTGATGATATTGGGTGTCTATCAAAGAGAGAGTTCATAGAAGCGATCTCATTATATCTTAATCAAAGAAGTAGTTTGGCATCAAATGATTTCTCCAAGTTCTGCATTTGTGGTGGTAGACGTGAAAATACTCGCCATAAAAATAATATTAATAACAGTGCTAATTATTCCTCCAAGCATATTGAAGTGATCAATAACCAACAGAAGCAACTAGAGGAAATGAAATACCTTTTTGAAGAGACAAAAATGGAAGTCAAACAAATTCAGTCAGAATGGGAGCAAGAAAGTTGTAGGCTAGAGGAACATATCAAGAGTCTTGAAGTGGCCTCCTTTTCCTTTCACAAAGTTTTGGAGGAGAATCGTAATCTTTATAATCAAATACAAGACCTCAAAGGAACCATTAGGGTGTATTGTAGAGTGAGGCCATTCTTAGGAGGACAATCAAATGGAGAGTCTACGGTAGACTATATTGGAGAAAATGGAGACATGATGATTGTGAACCCCCTTAAGCAAGGCAAAGATTCTAGAAGGGTATTTTCATTCAATAAAGTATTTGGAACAGCGGTAACACAAGAACAAATATATGCTGACACTCAACCACTTGTGAGGTCTGTTTTAGATGGTTACAATGTGTGCATTTTTGCATATGGACAGACGGGCTCAGGAAAGACCTACACAATGAGTGGTCCTGATCTGACAAATGAAGAGACATGGGGTGTTAATTATAGAGCTCTGCGTGACTTATTTCATATAACGAAGGAAAGGACAAATGCCATCAAATATGAAGTTTATGTTCAGATGATTGAGATTTACAATGAACAAGTCAGAGACTTGTTAGTCATCGATGCCTCTAACAGAAGATTAGATATACGAAACAACTCTCAACTGAATGGTCTAAATGTCCCTGATGCATTCATAGTTCCAGTCACTTGTACTCAAGATGTTCTTGATTTGATGAGAATCGGTCAAAAGAATCGCGCCGTGGGTGCTACAGCACTAAATGTTAGAAGCAGCCGCTCTCACAGTGTTCTAACAGTTCATGTTAGAGGGGTGGAATTGGTTTCGAACTCGATTCTTCGAGGTTGTCTTCACCTAGTTGATCTGGCTGGAAGTGAGAGGGTTGATAAATCTGAAGCTGTTGGTGAAAGACTAAAAGAAGCTCAATATATAAATAGGTCACTTTCTGCACTTGGAGATGTTATCTCTGCTCTTGCTCAGAAAAGCCCTCATATTCCTTACAGAAATAGCAAGCTCACACAAGTCTTACAAGATTCTTTAGGTGGGCATGCAAAAACTTTGATGTTTGTTCACATAAATCCTGAAGTTAATGCAATTGGGGAGACAATTAGCACACTCAAGTTTGCTGAAAGGGTTGCATCCATTTCACTTGGTGCTGCTCAAACTAACAAAGAAACTGGAGAGATCAGACAACTAAAGGAAGAGATTGCAAGTTTGAAATTGACCATAGAAAAGAAGGAAACAGAACTTGAACAATGGAAGAATGGGAATAACAGTAGAAATGCAATTGAATCACAGAAAGGAAGAGCTATTTCACCATATCGCTTGCCCAAATATGGAAACAACAGTGCCACCATCAAGCCAGACATTTGTCAGAGACCAACACCAACAGATGATAAAAGTTTTGAGGTGAGGAGTTGCTCTTCTGGTAAGCAAAGAAGGTCAAGGTTCCCCTCAGCATTGGATTCATCACCAATGTCAAAAATGTCTCTCATGAATGAAGAAAAAATGGACAATTTTAATTCACATAAAGGAAGATCTCCATCACCTCCAGTTATTAGAAGATCAAAATCCACAGAAAGAGGTTCATCAGTCATCAAAATCAAGGTCAAAATCGACACAGCAGATAATAATAATAATAACAACAACAATAATCAAAACCAAAACCAACCAATAATCAAGCATCCATTCCCATCAAGTAGGAAAGTTCACCAAGAGATTAATGATGAAGATCAATTCAAGCAAGCACTTAGTGTAGTAAGGCAAGGTGGTATTAGAAAAATTACTAAGGTTGTTGATGGTAGCAATAATAATAATTATTATTATAATAAGGGTAAGGCTAAAAATAATAATAGTCAATTGTCACCCTTTAAGATTCAACAGCATCAAAAGCATGATATGTTGGTCCCTTCATCATTTGGTGAAATTGCTTTGGAGTCACCAAGAACAAGTGATTATTCAGATCAGTCAGAAAATAGTCTTGGCTTTACTGAATCCATTGCAGATTGTGGTGGTTTGAATCTTACCACCAAGATGCTTGATAACTTTCCAAGGAGTTCTCAAAACCTTTTTGGTTCAAGAGGAATGGTGCAAGGAGGTGAAGCATTATTATCAGTTAGCAGAGCTGAGAACAAAGTTTTGAATGGTTCAGGTAGTAATACTAAAGAATCAAGTAAGACAGCCATGCCTGAATTTCGAAGGAGCAGATCTACCCCACGTGGAAAGTTTCTTGGTTCATCATGA 3237 0.388 MDEGAKALLPKEPSEEEFRNALRNGLILCNVLNKVHPGAVFKVVENGGVAALPSAEGAAHSAIQYFENVRNFLEAVKDLHLLTFEASDLEKGGSSNKVVDCILCLKGYYEWKLSGGEGVWKYGGTVRITSLPKRSSPSSLSSTIGSDQSADDHQSLLDEQEASQYEQLLEFLQLSQEFLIEESRTANTLSFLFDHFGLRLLQAYLRESDHIQDLPLNAMVIDTLLNKVVKDFSSLLASQGTQLGLFLKKILKGDDIGCLSKREFIEAISLYLNQRSSLASNDFSKFCICGGRRENTRHKNNINNSANYSSKHIEVINNQQKQLEEMKYLFEETKMEVKQIQSEWEQESCRLEEHIKSLEVASFSFHKVLEENRNLYNQIQDLKGTIRVYCRVRPFLGGQSNGESTVDYIGENGDMMIVNPLKQGKDSRRVFSFNKVFGTAVTQEQIYADTQPLVRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLTNEETWGVNYRALRDLFHITKERTNAIKYEVYVQMIEIYNEQVRDLLVIDASNRRLDIRNNSQLNGLNVPDAFIVPVTCTQDVLDLMRIGQKNRAVGATALNVRSSRSHSVLTVHVRGVELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQYINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPEVNAIGETISTLKFAERVASISLGAAQTNKETGEIRQLKEEIASLKLTIEKKETELEQWKNGNNSRNAIESQKGRAISPYRLPKYGNNSATIKPDICQRPTPTDDKSFEVRSCSSGKQRRSRFPSALDSSPMSKMSLMNEEKMDNFNSHKGRSPSPPVIRRSKSTERGSSVIKIKVKIDTADNNNNNNNNNQNQNQPIIKHPFPSSRKVHQEINDEDQFKQALSVVRQGGIRKITKVVDGSNNNNYYYNKGKAKNNNSQLSPFKIQQHQKHDMLVPSSFGEIALESPRTSDYSDQSENSLGFTESIADCGGLNLTTKMLDNFPRSSQNLFGSRGMVQGGEALLSVSRAENKVLNGSGSNTKESSKTAMPEFRRSRSTPRGKFLGSS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152059g00001 1078 Gene3D - 3 109 IPR036872 -
Stsc152059g00001 1078 PRINTS Kinesin heavy chain signature 663 684 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc152059g00001 1078 PRINTS Kinesin heavy chain signature 614 632 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc152059g00001 1078 PRINTS Kinesin heavy chain signature 583 600 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc152059g00001 1078 PRINTS Kinesin heavy chain signature 460 481 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 131 155 - -
Stsc152059g00001 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 750 IPR027417 -
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 871 891 - -
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 131 151 - -
Stsc152059g00001 1078 PANTHER KINESIN-LIKE PROTEIN KLP-3 9 896 IPR027640 GO:0003777|GO:0007018
Stsc152059g00001 1078 SUPERFAMILY Calponin-homology domain, CH-domain 13 145 IPR036872 -
Stsc152059g00001 1078 FunFam kinesin-like protein KIN-14F 380 754 - -
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 809 834 - -
Stsc152059g00001 1078 ProSiteProfiles Calponin homology (CH) domain profile. 1 110 IPR001715 GO:0005515
Stsc152059g00001 1078 SMART ch_5 1 108 IPR001715 GO:0005515
Stsc152059g00001 1078 CDD CH_AtKIN14-like 7 106 - -
Stsc152059g00001 1078 Coils Coil 316 343 - -
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 1043 1057 - -
Stsc152059g00001 1078 SMART kinesin_4 383 721 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc152059g00001 1078 Pfam Kinesin motor domain 391 713 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc152059g00001 1078 Coils Coil 720 754 - -
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 780 891 - -
Stsc152059g00001 1078 Gene3D Kinesin motor domain 327 715 IPR036961 -
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 791 808 - -
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 1043 1078 - -
Stsc152059g00001 1078 MobiDBLite consensus disorder prediction 755 774 - -
Stsc152059g00001 1078 ProSiteProfiles Kinesin motor domain profile. 385 713 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc152059g00001 1078 Pfam Calponin homology (CH) domain 14 110 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152059g00001 Stsc-Chr152059 1442 10418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152059g00001 315 713 Calmodulin-binding Proteins AT5G65930 39.500 1.50e-77 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152059g00001 K10406 - gmx:100793458 1436.4