Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152057g00004 ATGGGTTTTGGATTTATTGAGTTTGACTCTCTGGAGACTGCTACAAATATCTGCAAAGATTTACAGGGGACAGTTTTGGATGGGCATGCTCTTATTTTACAACCTTGTCATGCCAAGAATGGTGGGCAATTAGAAAAGAAAGTTGAGAAGGACAAGAGTTCAACAAAATTGCTTATTAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATTTGAGACAGTTATTCAGTCCCTTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTCGGAAATCATAGAGGGTTTGCTTTTGTGGAGTTTGTTACTCAGCAAGAAGCACAGAATGCACTTAAGGCACTTTCAAGCACCCATCTTTATGGAAGGCATCTAGTAATAGAGCGGGCGAAAGAAGGTGAGAGTTTGGAAGAACTACGCGCTCGCACTGCTGCTCAGTTCAGTGATGAACAAAATGGATTTCAAAATGCTACTAAGTTATCCAGAAAAAGGAAACAAATGGCTGTGTTAGATGAAGGAAAGATGAAGTTTCAAAGGATTGCTGATTAG 546 0.3974 MGFGFIEFDSLETATNICKDLQGTVLDGHALILQPCHAKNGGQLEKKVEKDKSSTKLLIKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEFVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDEQNGFQNATKLSRKRKQMAVLDEGKMKFQRIAD 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152057g00004 181 CDD RRM6_RBM19_RRM5_MRD1 55 129 - -
Stsc152057g00004 181 SUPERFAMILY RNA-binding domain, RBD 2 41 IPR035979 GO:0003676
Stsc152057g00004 181 Gene3D - 47 157 IPR012677 -
Stsc152057g00004 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 131 IPR000504 GO:0003723
Stsc152057g00004 181 FunFam Multiple RNA-binding domain-containing protein 1 49 155 - -
Stsc152057g00004 181 SUPERFAMILY RNA-binding domain, RBD 50 134 IPR035979 GO:0003676
Stsc152057g00004 181 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 48 162 - -
Stsc152057g00004 181 SMART rrm1_1 56 127 IPR000504 GO:0003723
Stsc152057g00004 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 124 IPR000504 GO:0003723
Stsc152057g00004 181 Gene3D - 1 46 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152057g00004 Stsc-Chr152057 13405 15991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152057g00004 2 156 Eukaryotic Initiation Factors Gene Family AT4G34110 25.309 4.35e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152057g00004 K14787 - gmx:100796243 315.464