Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152053g00003 ATGGCTTTCTTCTTAGTTTCCCTTTTCTCTCTCTTCTTGTTCCTTTCTTCATCAGCCACCGCTTGTGATCGTTGTCTCCACCAATCCAAGGCTTCATTTTTCTCCAAAGCCTCTTCTCTGTCAGCTGGGGCATGTGATTATGCTGAATTGGCACTGTCATTAAGTGCTGGAAACCTTGCAGCTGCTGTTCCTTCAATCTTCAAAGATGGTGCTTCTTGTGGTGCCTGCTTTCAGATTAGATGCAAGGACCCTAAGGTGTGTTCAAAATCAGGAACCAGAGTGGTCGTTACTGATCTCAACAGAGATAATAAAACTGATTTTGTTCTTAGCAGCAGAGCCTTTCAGTCTTTGGCTGTCAAAGGAAAAGCTCAATACCTTCTCAAGCTTGGCATTCTCGACATTGAATACAAGAGGTATAATGCTAATCAATTTAATCAAAAAATTTAA 447 0.4139 MAFFLVSLFSLFLFLSSSATACDRCLHQSKASFFSKASSLSAGACDYAELALSLSAGNLAAAVPSIFKDGASCGACFQIRCKDPKVCSKSGTRVVVTDLNRDNKTDFVLSSRAFQSLAVKGKAQYLLKLGILDIEYKRYNANQFNQKI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152053g00003 148 PANTHER EXPANSIN-B3 13 142 - -
Stsc152053g00003 148 Pfam Lytic transglycolase 61 136 IPR009009 -
Stsc152053g00003 148 SUPERFAMILY Barwin-like endoglucanases 13 142 IPR036908 -
Stsc152053g00003 148 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Stsc152053g00003 148 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Stsc152053g00003 148 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Stsc152053g00003 148 Gene3D - 15 140 IPR036908 -
Stsc152053g00003 148 CDD DPBB_EXLA_N 19 138 - -
Stsc152053g00003 148 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 138 IPR007112 -
Stsc152053g00003 148 SMART dpbb_1 60 136 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152053g00003 Stsc-Chr152053 21012 21742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152053g00003 1 142 Expansin Gene Family AT3G45960 61.111 4.83e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152053g00003 - - cave:132192007 178.333