Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152037g00001 ATGTCAACAAAAGTTATTGAAAATAGTTCATCATCATCTTCTTTGAGTGTGCCTTTGCTCTCTGATGAGCAAGGCTATGCCAAAGAAGAGAATAGTAATCTTATAGCAGTCTCCCATTCACTTCTTACTACTACAGCCAATGTATCTTTATCACGCACATGCTTTAATGTACTCAATGCAATAGCAGGCGTTGGGATGCTGTCGGTTCCATATGCCCTAGCTTCCGGAGGGTGGTTACGTATAACTCTGTTGTTTGCTGTAGCCATGGTAGCATTTTACTCAAGCATATTGATCAAAAGATGCTTGGATTACAATCCTAACATCAGAACCTACCCTGATATTGGTGAACAGGCATTTGGAAAATTTGGAAGAATAATAGTGTCGGTGTCAATGTACTTGGAGCTCTACCTTTGTTCAACAACACTGTTGATTATTGAGGGTGATCACTTGAATGATCTCTTCCCAAACTTTGGTTTAGGAATAATCAGTGGGAAGCAATTGTTTGTGGTATTGGTTGCTATTATAATATTGCCCACTGTCTTGTTGGATGACATGAGTTTCCTCTCTTATGTATCTGCAAGTGGTATCTTTGCTTCTCTTGTTATCATTCTTTCAGTGTTGTGGGTTGCAACCATTGATGGAGTTGGGTTTCATGAAAAGAGAGATCTTCTTAATTGGAATGGAATCCCCACAGCTGTTAGTTTGTATGCTGTTTGTTATGGTGGACTTCCAGTCTTTCCCACATTATATACTTCCATGGCGAACAAGCAACACTTCTCAAAGGTTCTACTCGTGAGTTTTATGTTAGCCACAATTGGGAATGCATCCATAGCTATAATTGGGTATCTAATGTTTGGACCAAACACTAAATCACAAGTAACTCTAAATTTGCCAATAGATGAAATAAGCTCAAAGATAGCCGTATATACCACTGTGGTGAATCCCATTACAAAATACGCTTTGTTTACAACACCAATTACCAATGCTTTAAAAGATTTGCTTCCAACAAAGTACAAGAATAGGAGAGTGTTCCATATGTTGATCAGCACTTTGATGTTGATCAGCAATGTCATCATTACCTTAACTGTGCCTTTATTCGGGGATGTCATGTCTCTAATTGGAGCATTTCTAATTGTTACATCTTGTATTCTACTTCCATGCTTATGCTACTTAAAGATTTCTGGAAACTACTGCAAACTTGGGTTTGAAACAATTGCCATAGCGGTTATCATTGTAGGGGCTGCTGCTGTTGGAATATCCGGGACTTGCGCCTCGCTTATAGACATACCCCATCTCCAGCAACACAATCTTCTTCAAGCTCATCCATGGTCGATCTCCATCTCTGTCCCTTCCTCCTTTGCGCCGGCGTTGCTTCGGTTGACTCTTGCTGGCGAAGCATTCCTACTCACCCTCCACCAGTGCTTCGTTGATGCCTCGGCGATGATGCTACTATGTCGTTGGAATTGCTACCGCGACAGCGAAATTGTAGAAACTCCGACTCGGTTGTCGGATGCGATTGCGTCTTCTGCCATCACTTGA 1539 0.412 MSTKVIENSSSSSSLSVPLLSDEQGYAKEENSNLIAVSHSLLTTTANVSLSRTCFNVLNAIAGVGMLSVPYALASGGWLRITLLFAVAMVAFYSSILIKRCLDYNPNIRTYPDIGEQAFGKFGRIIVSVSMYLELYLCSTTLLIIEGDHLNDLFPNFGLGIISGKQLFVVLVAIIILPTVLLDDMSFLSYVSASGIFASLVIILSVLWVATIDGVGFHEKRDLLNWNGIPTAVSLYAVCYGGLPVFPTLYTSMANKQHFSKVLLVSFMLATIGNASIAIIGYLMFGPNTKSQVTLNLPIDEISSKIAVYTTVVNPITKYALFTTPITNALKDLLPTKYKNRRVFHMLISTLMLISNVIITLTVPLFGDVMSLIGAFLIVTSCILLPCLCYLKISGNYCKLGFETIAIAVIIVGAAAVGISGTCASLIDIPHLQQHNLLQAHPWSISISVPSSFAPALLRLTLAGEAFLLTLHQCFVDASAMMLLCRWNCYRDSEIVETPTRLSDAIASSAIT 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152037g00001 512 PANTHER OS05G0424000 PROTEIN-RELATED 54 417 - -
Stsc152037g00001 512 Pfam Transmembrane amino acid transporter protein 49 419 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152037g00001 Stsc-Chr152037 13660 17613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152037g00001 49 429 Amino Acid or Auxin Permease AAAP Family AT3G28960 55.584 2.83e-151 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152037g00001 K15015 - gmx:100794374 509.22