Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152021g00001 ATGATATCCAACAGAATGCTCTTTTGGCTGTCTTGCTTTGTCATTTTTCTTTTTTCCATCATAACTGTTCATTATACCAACTCTCCTTCGTCGTCTGACGCCATAACCATTGTTAGTTCTCAAGACAGTTTCAATTTTCAGCTCAGTTTATTTCGTAAAATTATAAAGCTTAGTGGTGCCCAAGATCTTTTGTCTCTGGTAACAAGTATTTCAAGGAGACGTCATCACCGGAGACACAAAACCAAATGTGACCCCTCCAAATGGAATTCCACCCTTATTCAAGATTACAATGTGTCTAGAGTTTTCTCGGTTGACTTAAAGGGCTGTGCTAACTTTAGTAGTGTGCAGGACGCAGTTGATGCTGTTCCTCAATTTAGAACTGATACCACCCTTATCATAATTGATTCTGGTATATACAGGGAGAAGGTGGTGGTGCAGGCCAACAAAACAAACTTGATAATTCAAGGTCAAGGATATCTTAACACAATCATAGAATGGAATGACACGGCGAATTCCACTGGAGGCACTCCCGATAGCTATTCCTTTGCTGTCTTTGCTTCTAAGTTCACCGCCTATAATATCAGCTTTAAGAACGCAGCGCCTCCACCTTTGCCGGGAGAGGTCGGGGCACAGGCGGTGGCATTGAGAATTACCGGTGATCAAGCTGCGTTCTATGGTTGCGGGTTTTATGGTGCACAGGACACACTCAATGATGATATGGGAAGACATTATTTTAAAGAATGTTTCATTCGAGGGTCCATTGATTTCATATTTGGGAATGCTAGATCACTTTACGAGGATTGTGTGATTGACTCGATAGCAAAAGAAGGTTGGGTTGGCGTTAGCGGATGCATCACCGCACAGGGTCGGCAATCGAAGAGCGACGAAACAGGGTTTTCCTTTGTGAATTGCAGCATCCTTGGCAGTGGCCAAGTCTGGCTTGGAAGAGCATGGGGACCCTATGCCACCGTCATATTCTCAAAAACATTCATGTCCAACGTTGTTGTTCCTGAAGGATGGAACGATTGGAGAGATCCCTCTAGAGACAAGACCGTGTTCTTCGGGGAGCACCGTTGTGCGGGAGCTGGAGCAAATTTTACATCTAGAGTCTCTTACGCCAAACAACTCACCGATTATGAGGCAATCTACTACACCAATATTTCATACATTGATGGAAATGATTGGCTTCTTAATTAA 1197 0.4353 MISNRMLFWLSCFVIFLFSIITVHYTNSPSSSDAITIVSSQDSFNFQLSLFRKIIKLSGAQDLLSLVTSISRRRHHRRHKTKCDPSKWNSTLIQDYNVSRVFSVDLKGCANFSSVQDAVDAVPQFRTDTTLIIIDSGIYREKVVVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTPDSYSFAVFASKFTAYNISFKNAAPPPLPGEVGAQAVALRITGDQAAFYGCGFYGAQDTLNDDMGRHYFKECFIRGSIDFIFGNARSLYEDCVIDSIAKEGWVGVSGCITAQGRQSKSDETGFSFVNCSILGSGQVWLGRAWGPYATVIFSKTFMSNVVVPEGWNDWRDPSRDKTVFFGEHRCAGAGANFTSRVSYAKQLTDYEAIYYTNISYIDGNDWLLN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152021g00001 398 Gene3D - 95 398 IPR012334 -
Stsc152021g00001 398 Pfam Pectinesterase 106 393 IPR000070 GO:0030599|GO:0042545
Stsc152021g00001 398 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 91 396 - -
Stsc152021g00001 398 FunFam Pectinesterase 96 398 - -
Stsc152021g00001 398 ProSitePatterns Pectinesterase signature 2. 250 259 IPR033131 -
Stsc152021g00001 398 SUPERFAMILY Pectin lyase-like 99 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152021g00001 Stsc-Chr152021 16208 18022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152021g00001 77 396 Carbohydrate Esterase AT1G05310 52.941 4.52e-120 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152021g00001 - - gmx:100802034 630.943