Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc152001g00004 ATGGCTATGGCTTCCTCTAGCTTCCAACAAAACAAGCATTCTCCTTCCAATGTGATCCGTTTCTTCAAGATTATTCTCAGAAAATCTCTTCAAGATGGAAACCTTAAGTTACCAAACAAGTTCACTAACAAATATGGTTGTGGCCTACCAAACCCATTGTATCTTAAGCCTCCAGATGGCACTGAATGGAAAGTAGATTGGACTAATTATGATGGTGGAATTCTGTTTGAAAAGGGTTGGAAAGAGTTTGCTGCATATTACTCTCTTGATAATGGCTATTTGCTGTTCTTTGAGTATAATGGAACTTCTCACATTGAAGTACACATACATGACATGAGTGGCCTTGAAATAGACTATCCTGCGATTCCTGCCAACGACCAGATCAAAGAGCAGCTGCCACGATGCAGGGGCCGGCCATGGAAATGTCTGAAAGAACCAATTCCATCATCCCCTTCTACAGCTAAACAATTGAGAAGTGCCACAACAACTAGAGATGTGGATAGCAGTCCCAACACCCAAAACATGAGACTTAATGAGGGCCGGCCCAGGAAAAGATTGAAAGCATCGATGTCATCTCCTTCTAAATGTATACAGTTGGAAAATGACACACAGATCAGAGATGTGGAAAGAAGCCTCAATCCGCAAGGCAAAAAGAATAGAAGAAGACAAGATTCTAAATCTTCTGTTAGGCCGTGCCCTGCGAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTCAAGTGGGAAAATCCCTCTTTCCTCATCAAAATAAGGCAACGGACTCAATCAAGTTCACCATGTTACTTTTCATATAAATTCTTCCGAAAGTATTTTGAAAGTAGTCCACAGAATGCAAACATGAGGTTTGGAAAGGAGGTGTTCCCTGCTACGTTGTTGTATAGGCCATCAACTTGTAATGCCTCTATCTCTGCTGGTTGGAGCCTTTTTGCTAAAGCTTGTAAATTACAAGTTGGAGATTTTTGTATGTTTGAGCTCACCGATAGAAAAGATGCAGTGCTTGATGTTCGTATCTGTCGTCGACCAGGCCGCGCTAAGGAGTTCAACTCAGAAAATCCTACTTTCATGGTCAAGATAAAGAGAAGTGATCCAAAGAAATCAAGGCCTAGCATATCAGGTGTCTTCTTCAGAAAGTATTTTAAAAAGAATAAACAGCATGTGAAGTTAAGGTTTGGAGAGAAGTTGTTGCCTGCTAACTTCATCTACAATCCATCAACAAAAAATGCCTTTTTTTCATCTGGTTGGAGTTCTTTTGTTCAAGCAAGTGAATTGGAAGCTGGAGATATACTAATCCCTGCCGTTCTAGGAGCTAGTCGAGGTGGCTCTTCCTCCCTGAAGCTTCGCCAAGCAACACTGAAAGAGCTCTACCCCAACAACTAG 1395 0.4151 MAMASSSFQQNKHSPSNVIRFFKIILRKSLQDGNLKLPNKFTNKYGCGLPNPLYLKPPDGTEWKVDWTNYDGGILFEKGWKEFAAYYSLDNGYLLFFEYNGTSHIEVHIHDMSGLEIDYPAIPANDQIKEQLPRCRGRPWKCLKEPIPSSPSTAKQLRSATTTRDVDSSPNTQNMRLNEGRPRKRLKASMSSPSKCIQLENDTQIRDVERSLNPQGKKNRRRQDSKSSVRPCPARPESLKEAKKFKWENPSFLIKIRQRTQSSSPCYFSYKFFRKYFESSPQNANMRFGKEVFPATLLYRPSTCNASISAGWSLFAKACKLQVGDFCMFELTDRKDAVLDVRICRRPGRAKEFNSENPTFMVKIKRSDPKKSRPSISGVFFRKYFKKNKQHVKLRFGEKLLPANFIYNPSTKNAFFSSGWSSFVQASELEAGDILIPAVLGASRGGSSSLKLRQATLKELYPNN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc152001g00004 464 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Stsc152001g00004 464 MobiDBLite consensus disorder prediction 149 177 - -
Stsc152001g00004 464 CDD B3_DNA 20 111 IPR003340 GO:0003677
Stsc152001g00004 464 PANTHER B3 DOMAIN-CONTAINING 11 335 - -
Stsc152001g00004 464 MobiDBLite consensus disorder prediction 142 237 - -
Stsc152001g00004 464 MobiDBLite consensus disorder prediction 202 228 - -
Stsc152001g00004 464 SUPERFAMILY DNA-binding pseudobarrel domain 15 113 IPR015300 -
Stsc152001g00004 464 CDD B3_DNA 358 436 IPR003340 GO:0003677
Stsc152001g00004 464 SMART B3_2 21 113 IPR003340 GO:0003677
Stsc152001g00004 464 SMART B3_2 252 347 IPR003340 GO:0003677
Stsc152001g00004 464 SMART B3_2 360 456 IPR003340 GO:0003677
Stsc152001g00004 464 Gene3D - 348 444 IPR015300 -
Stsc152001g00004 464 Gene3D - 234 347 IPR015300 -
Stsc152001g00004 464 Pfam B3 DNA binding domain 21 110 IPR003340 GO:0003677
Stsc152001g00004 464 Pfam B3 DNA binding domain 262 346 IPR003340 GO:0003677
Stsc152001g00004 464 CDD B3_DNA 267 345 IPR003340 GO:0003677
Stsc152001g00004 464 SUPERFAMILY DNA-binding pseudobarrel domain 248 346 IPR015300 -
Stsc152001g00004 464 SUPERFAMILY DNA-binding pseudobarrel domain 354 436 IPR015300 -
Stsc152001g00004 464 Gene3D - 14 114 IPR015300 -
Stsc152001g00004 464 ProSiteProfiles B3 DNA-binding domain profile. 308 347 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc152001g00004 Stsc-Chr152001 14546 18861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc152001g00004 21 345 B3 DNA Binding Superfamily AT3G18990 26.239 1.04e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc152001g00004 B3 5.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc152001g00004 - - adu:107471893 530.406