LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151997g00001	ATGCAACATAGGTTGAAGTTGCAGCAACAACAACAACAAGCCCTAATGCAACAAGCCTTGCTTCAACAACAACAGATGTACCACCCTGGCATGCTTGCTGCTGCAATGTCTCAGCAGATGGAGCCAGTTCCAGGCGGAAATCTACCCCCTGGGTTTGACACTTCTTCATGCCGTAAAGTTTTTCAGAGTGCTGGTCCTCTGGCTGGGTGCAAGCTTATTAGAAAAGAAAAGTCCTCTTACGGTTTTGTGGACTATCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGAAGGCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGAGAGGATACTTCAGGGCACTACAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCGACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGGCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCACAAAGTGCTATCAATGATATGACAGGTAAATGGCTGGGAAATAGGCAGATACGATGCAATTGGGCAACTAAGGGTGCCAGTACTAGCTCCAATGAAGAGAAGAGCACTGACAACCAAAATGCTGTTGTGCTTACAAATGGTTCTTCAGATGGAGGTCAAGATAACAGCAATGAGGATGCCCCTGAAAACAATCCCGCATACACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAATTTCATGCACTGGGGGCTGGAGTTATTGAGGAGGTTCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGATACAACACTCACGAGGAAGCAGCGTTGGCCATTCAGATGGCTAATGGAAGAATAGTTCGCGGGAAATCTATGAAGTGTTCATGGGGCAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCTCTGCCGCCTCCTGCTCAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTCCTGCTGAGTTGTTGGCGTATCAGCGCCAGCTGGCCTTGAGTCAAGCTGCTGTATCTGGCCTTTCAGGTCAAGCACTTCTGCAGATGTCTGGACAACATGGCCTAGCTCCTGCATCAATGGGCATAAACTCTGGGGGATCCCAAGCCATGTATGACGGATATGCTGGTAATTCATCAAGACAGCAGCTCATGTACTATCGTTAA	1263	0.4624	MQHRLKLQQQQQQALMQQALLQQQQMYHPGMLAAAMSQQMEPVPGGNLPPGFDTSSCRKVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGASTSSNEEKSTDNQNAVVLTNGSSDGGQDNSNEDAPENNPAYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSGGSQAMYDGYAGNSSRQQLMYYR	420

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151997g00001	420	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	248	322	IPR000504	GO:0003723
	Stsc151997g00001	420	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	36	325	-	-
	Stsc151997g00001	420	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	41	115	IPR000504	GO:0003723
	Stsc151997g00001	420	CDD	RRM2_PUB1	125	204	-	-
	Stsc151997g00001	420	Gene3D	-	125	225	IPR012677	-
	Stsc151997g00001	420	MobiDBLite	consensus disorder prediction	204	246	-	-
	Stsc151997g00001	420	Gene3D	-	2	124	IPR012677	-
	Stsc151997g00001	420	FunFam	Nucleolysin TIAR-like protein	124	223	-	-
	Stsc151997g00001	420	FunFam	Oligouridylate-binding protein 1C	225	326	-	-
	Stsc151997g00001	420	SUPERFAMILY	RNA-binding domain, RBD	46	205	IPR035979	GO:0003676
	Stsc151997g00001	420	Gene3D	-	226	326	IPR012677	-
	Stsc151997g00001	420	SUPERFAMILY	RNA-binding domain, RBD	238	331	IPR035979	GO:0003676
	Stsc151997g00001	420	SMART	rrm1_1	46	111	IPR000504	GO:0003723
	Stsc151997g00001	420	SMART	rrm1_1	249	318	IPR000504	GO:0003723
	Stsc151997g00001	420	SMART	rrm1_1	127	200	IPR000504	GO:0003723
	Stsc151997g00001	420	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	128	198	IPR000504	GO:0003723
	Stsc151997g00001	420	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	46	109	IPR000504	GO:0003723
	Stsc151997g00001	420	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	250	315	IPR000504	GO:0003723
	Stsc151997g00001	420	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	126	204	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151997g00001	Stsc-Chr151997	2873	9494	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151997g00001	47	322	Eukaryotic Initiation Factors Gene Family	AT2G23350	29.268	2.16e-24	103

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151997g00001	K13201		-	gmx:100777108	779.63