Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151996g00002 ATGTCATCGGATCCAGATATGAAGTCTCAGATCGCGAATCACCCTCGCTATCCAGATTTGCTCTCTGCTTATATTCAATGTCAAAAGGTTGGAGCGCCTCCAGAAGTGGCGTCTCTGCTTGAAGAAATAAGCCGTGAAAGTCACCCAATAATGGATACTCGCCGCCATCATCAGATTGGAGATGATCCTGAGCTTGATGATTTCATGGAATCATACTGCGATGTTCTTCATAAATACAAGGAGGAGCTATCGAAGCCATTCAACGAAGCAAACTTGTTTTTGTGTAACATCCAGTCACAACTCACCAATCTTTGTAAAGGAACACTAACAATTTCTCACCACAACCACAACAAAGCTAATCATCCATCCGATGAAGCAGGAGGAGGGAGTTGTTCAGAGTTGGAAGGAGATGAATTTGGAAATGGGAGATGGACATGTGGAGTTGGAGATAAAGAAATCAAGGATATGCTGCTTAGTAAGTACAGTGGTTATCTTAGTAGCTTGAGAAAGGAGTTTCTTAAGAAAAAGAAAAAGGGTAAGCTTCCTAAACATGCAAGGATTGCACTCATGGACTGGTGGAATTCCCATTATAGATGGCCTTATCCTACGGAGGAGGAGAAATTGATGCTATCAGAGATGAGTGGACTGGACATAAAGCAAATAAACAATTGGTTCATAAATCAGAGAAAACGCCATTGGAAACCATCTTCAGATATGCGATTTTCTGTCATGGAAGGTGTAAGTGGCACTTCCCATGCCACCATCTTAGAACATATGTAA 780 0.4167 MSSDPDMKSQIANHPRYPDLLSAYIQCQKVGAPPEVASLLEEISRESHPIMDTRRHHQIGDDPELDDFMESYCDVLHKYKEELSKPFNEANLFLCNIQSQLTNLCKGTLTISHHNHNKANHPSDEAGGGSCSELEGDEFGNGRWTCGVGDKEIKDMLLSKYSGYLSSLRKEFLKKKKKGKLPKHARIALMDWWNSHYRWPYPTEEEKLMLSEMSGLDIKQINNWFINQRKRHWKPSSDMRFSVMEGVSGTSHATILEHM 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151996g00002 259 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 19 241 - -
Stsc151996g00002 259 Pfam KNOX1 domain 7 48 IPR005540 GO:0003677|GO:0005634
Stsc151996g00002 259 SUPERFAMILY Homeodomain-like 174 244 IPR009057 -
Stsc151996g00002 259 SMART HOX_1 174 239 IPR001356 GO:0003677
Stsc151996g00002 259 ProSiteProfiles 'Homeobox' domain profile. 172 235 IPR001356 GO:0003677
Stsc151996g00002 259 SMART KNOX2_2 55 106 IPR005541 GO:0003677|GO:0005634
Stsc151996g00002 259 ProSiteProfiles ELK domain profile. 152 172 IPR005539 GO:0003677
Stsc151996g00002 259 Pfam KNOX2 domain 58 105 IPR005541 GO:0003677|GO:0005634
Stsc151996g00002 259 Pfam ELK domain 152 173 IPR005539 GO:0003677
Stsc151996g00002 259 SMART ELK_2 152 173 IPR005539 GO:0003677
Stsc151996g00002 259 CDD homeodomain 198 236 IPR001356 GO:0003677
Stsc151996g00002 259 Pfam Homeobox KN domain 192 231 IPR008422 GO:0003677|GO:0006355
Stsc151996g00002 259 Gene3D - 170 244 - -
Stsc151996g00002 259 SMART KNOX1_2 5 49 IPR005540 GO:0003677|GO:0005634
Stsc151996g00002 259 ProSitePatterns 'Homeobox' domain signature. 210 233 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151996g00002 Stsc-Chr151996 6430 12990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151996g00002 7 250 Homeobox Transcription Factor Family AT1G23380 52.191 2.14e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc151996g00002 KNOX2 4.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151996g00002 - - gmx:100786114 325.479