Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151987g00003 ATGTCAAGCTCAGGAGAGCCAGCTGGATCACAGGGACCGGCTATAGCAATAGGCACCCGGGACAAGCCATTTAGGTTCACTACTCAACAGTTAAGGATTGTAACTGATAACTTCTCTTACTTACTGGGATCAGGAGGTTTTGGATCAGTATACAAAGGAGTTTTCAGTGACGGTACCATTATGGCTGTGAAGGTTCTGTTTACAAGTACTGACAAAAGAATTCAACAACAATTTATGGCTGAAATTGGAACTTTAGGTAAAGTTCACCATTTCAACTTAGTCAGACTCTTTGGATTTTGTGTTGACAACAACTTCATTGCAATAGTTTATGAGTACATGGCAAATGGCTCTCTGGACAAGTATCTGTTCAAAGAAGTCAAGACTTTGGGATTTGAAAAACTTCATGAGATTGCGGTTGGAACAGCAAGAGGGATTGCTTATTTGCATGAAGAGTGTCAACAAAGAATAATCCACTATGACATTAAGCCAGCAAATATTCTATTGGACATGAATTTCAATCCTAAGGTTGCGGATTTTGGATTGGCCAAGCTTTGTAACAGAGATAATACTCATATATCCATGACTGGAGGCAGGGGAACCCCCGGTTATGCCGCGCCGGAGCTTTGGATGCCGTTCCCGGTGACTCACAAGTGCGATGTTTATAGCTTTGGGATGCTGTTGTTTGAAATCATTGGTGGGAGAAGAAATGTTGATACTAATGTTCCGGAAAGCCAAGAGTGGTTTCCAATGTGGGTTTGGAAGAAATTTGATGGTGGAGAGTTATTACAAGAGTTAAGATTAGTTTGTGAATTATTATTGGAGGAGGAACATAAGGTGATGGTAGAAAGAATGGTGAAGGTAGGTTTGTGGTGTGTTCAGTATAGACCTGAATCAAGGCCTATGATGAGTGCTGTTGTCAAAATGTTGGAAGGCTCTGAAGAGATTCCAGAACCTCTGAATCCATTTCAATATTTGATGGATAACGGTTTTGGTGCTCTTCCACACCAAGATTCATGGAATAATGGCACCACTGCAACTAAAAGTAGTTATTGTGACTATTCTGTGATTGATGTGGAGTCCAATAATATTGTAACTACTGAATGCTGA 1107 0.4056 MSSSGEPAGSQGPAIAIGTRDKPFRFTTQQLRIVTDNFSYLLGSGGFGSVYKGVFSDGTIMAVKVLFTSTDKRIQQQFMAEIGTLGKVHHFNLVRLFGFCVDNNFIAIVYEYMANGSLDKYLFKEVKTLGFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPANILLDMNFNPKVADFGLAKLCNRDNTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGGRRNVDTNVPESQEWFPMWVWKKFDGGELLQELRLVCELLLEEEHKVMVERMVKVGLWCVQYRPESRPMMSAVVKMLEGSEEIPEPLNPFQYLMDNGFGALPHQDSWNNGTTATKSSYCDYSVIDVESNNIVTTEC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151987g00003 368 ProSiteProfiles Protein kinase domain profile. 36 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151987g00003 368 ProSitePatterns Protein kinases ATP-binding region signature. 42 64 IPR017441 GO:0005524
Stsc151987g00003 368 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 22 319 - -
Stsc151987g00003 368 CDD STKc_IRAK 42 311 - -
Stsc151987g00003 368 Gene3D Transferase(Phosphotransferase) domain 1 113 318 - -
Stsc151987g00003 368 FunFam PR5-like receptor kinase 113 318 - -
Stsc151987g00003 368 Pfam Protein kinase domain 41 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151987g00003 368 Gene3D Phosphorylase Kinase; domain 1 16 112 - -
Stsc151987g00003 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Stsc151987g00003 368 SMART serkin_6 36 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151987g00003 368 SUPERFAMILY Protein kinase-like (PK-like) 20 310 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151987g00003 Stsc-Chr151987 10837 12308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151987g00003 25 324 Receptor kinase-like Gene Family AT5G38280 42.532 3.87e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Stsc151987g00003 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151987g00003 - - gmx:100803355 498.434