Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151987g00001 ATGGTTACCGGCTACCGTGCCGAGGAAGTTCTCGGCCGCAACTGCCGTTTTTTGCAGTGTCGAGGCCCATTTGCTAAGAGAAGGCATCCATTGGTTGACTCAACGGTGGTTGCTGAAATTAGAAGATGCCTCGAAGAAGGGGTTGAATTTCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCGAACATTGATCTGGGGCCTCTTCCAAGTTCTACAACCAAGGAGTCTACTAAATCAGATCGTTTTCGTTCCGTGCTTTCCTCATTGCATCCTCGTGAGGTGGGGGACCGAAATGTCACTCGTGGTCTCTGTGGGATATTGCAATTGAGTGATGAAGTAATTTCTCTCAAGATTCTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTCTGTAGGCGATTGTATGAGCTGACAAGAAATGAAGACCTATGGAGAATGGTGTGCCAAAATGCATGGGGCTGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGTTGGGGTCGGTTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGTGCATGTGCAGTTGGCAATAGGGTTGTCCTATTTGGTGGTGAAGGAGTTAACATGCAACCTATGAATGACACCTTTGTATTAGATCTCAATTCTAGTAATCCCGAGTGGCAACATGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGACACACACTTTCTTGTGTCAATGGTTCCCGTTTGGTTGTATTTGGAGGGTGTGGAAGGCAGGGCTTACTTAATGATGTCTTTGTTCTTGACCTCGATGCAAAGCCTCCAACTTGGCGTGAAATTTCCGGATTGGCACCTCCACTTCCTAGATCATGGCACAGCTCTTGCACTCTTGATGGTACCAAGTTGATAGTTTCTGGAGGCTGTGCTGATTCTGGAGTCCTCTTGAGTGATACTTTCCTCCTTGATTTGTCGATGGAGAAACCTGTCTGGAGGGAGATACCAGTGACATGGACTCCGCCTTCCCGTCTAGGCCACACACTCTCTGTTTATGGTGGTAGGAAAATATTGATGTTTGGGGGTCTGGCCAAGAGTGGACCACTGCGGTTTCGCTCCAGTGATGTATTCACAATGGATTTAAGTGAGGATGAACCATGCTGGAGATGTGTAACAGGGAGTGGGATGCCTGGTGCTGGAAACCCTGGGGGTGTAGCTCCTCCTCCTAGGCTTGATCATGTGGCTGTTAGTCTTCCAGGTGGTAGAATTCTGATATTTGGTGGGTCCGTTGCAGGACTTCATTCTGCCTCCCAACTTTACATCCTTGATCCAACGGACGAGAAGCCGACATGGAGAATCCTAAATGTACCAGGGCGGCCTCCTAGATTTGCATGGGGACATAGTACATGTGTTGTTGGGGGGACAAGAGCTATCGTGCTGGGTGGCCAAACTGGGGAGGAATGGATGCTAAGTGAACTCCATGAACTTTCCCTGGCAAGTTCTGTGATCTAG 1647 0.4839 MVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVAEIRRCLEEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPSSTTKESTKSDRFRSVLSSLHPREVGDRNVTRGLCGILQLSDEVISLKILARLTPRDIASVGSVCRRLYELTRNEDLWRMVCQNAWGCETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGVAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151987g00001 548 Pfam F-box-like 144 182 IPR001810 GO:0005515
Stsc151987g00001 548 SUPERFAMILY F-box domain 127 197 IPR036047 GO:0005515
Stsc151987g00001 548 ProSiteProfiles PAS repeat profile. 1 47 IPR000014 -
Stsc151987g00001 548 Pfam Galactose oxidase, central domain 294 343 - -
Stsc151987g00001 548 Gene3D - 134 180 - -
Stsc151987g00001 548 SUPERFAMILY Galactose oxidase, central domain 218 533 IPR011043 -
Stsc151987g00001 548 Gene3D - 210 411 IPR015915 GO:0005515
Stsc151987g00001 548 Gene3D - 412 546 IPR015915 GO:0005515
Stsc151987g00001 548 Pfam Kelch motif 389 440 IPR011498 GO:0005515
Stsc151987g00001 548 Pfam Kelch motif 456 503 IPR011498 GO:0005515
Stsc151987g00001 548 FunFam Putative LOV domain-containing protein 414 547 - -
Stsc151987g00001 548 FunFam Putative LOV domain-containing protein 209 413 - -
Stsc151987g00001 548 Pfam PAS domain 3 86 IPR000014 -
Stsc151987g00001 548 Gene3D PAS domain 1 97 - -
Stsc151987g00001 548 Pfam Galactose oxidase, central domain 232 282 - -
Stsc151987g00001 548 CDD F-box_AtADO-like 135 181 - -
Stsc151987g00001 548 FunFam Adagio protein 1 133 180 - -
Stsc151987g00001 548 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 2 545 - -
Stsc151987g00001 548 SUPERFAMILY PYP-like sensor domain (PAS domain) 2 86 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151987g00001 Stsc-Chr151987 1 4209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151987g00001 2 87 AGC Kinase Gene Family AT5G58140 34.483 2.20e-08 55.1