Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151978g00001 ATGTCCAATTCTACTTCTTTGTCTGAAGAAGCAAGTGTCTCTTCTGGTACAAGAATTCAAGACTTTGGTGCCACCTTAAACCATGTTGTTTCAACTATTTCTCCTCCTCAACAAATTCCTCAAAAGATCAAGAAGAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGGTTTGTGTGTGAGATCTGCAACAAAGGGTTCCAAAGGGATCAAAACCTTCAGCTACATAGAAGAGGGCACAATCTTCCATGGAAGCTGAAGCAAAGAAACAACAAAGAAGTGGTGAAGAAGAGAGCATATGTTTGCCCTGAGCCTTCATGTGTTCATCACAATCCTTCAAGGGCTCTTGGGGACCTCACTGGAATCAAGAAGCATTATTGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGATCTATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAAACTTGTGGTACTAGAGAATACAGATGTGATTGCGGAACCCTTTTCTCCAGGAAGGACAGCTTCATAACACATAGGGCATTCTGTGATGCATTGGCTGAAGAGAGTGCAAGAATTTCAGCAAATCAACACCAATTACTCACAACAACAACACCCTCAAATCCATTACTTCAATCCCTCTTCCTTTTCCCAACCCAACAACATCATCAAACTTTCCAAAACAATTTCATCAACAACAACAACAACATTAATCATCCATGGGACCCACAATCATCATCTCAAGATCAAAACCCTAACCCTAACAACAACAACAACAACAACTTCCCTCCTCCTCCTCCTCCCACTATCACTATTAAGCCTGAAGCTCAAAACTTTCACATCCCAAATTCCGATAATGCCCCTCCATTGTTCCTTCACCAGAACCAGAATAAGAATAACAACAACATGATGATGACGTCACCCTTCAGGAACAACCCACACGTGCGCATGCAACCTCAATCCAACAATGCTAATTCTAATGCTGCTGCTGCTGCCACGTCAGCACATCTCTCAGCCACTGCTCTCCTCCAGAAGGCCGCCACGGTGGGTGCGGCCGCCATTACAGGCTCTAACGCCTCACTTGGAGTTGGCCATCACGTGACTGAACTCGGTAACATGACTCAGCTCGACTCCGTTCATTTCATGAACAACATGGGAGGGTTTAGCAACAACAATGTGAAGAGCCTCAAGAGTAGTGATGATCTTACAAGAGACTTTCTAGGGTTAACCGGTGATGCAAACGGCGAAGGAGGCGGCAACAGCAGAGCAAACGGTGGCACAGTTGACGTTAGCATGAACATGAAGGATATGCTAACGTACACCGGGAACATAGATTACCCCCACCAACGCCAACACCATCACCATGGCCAGCAACTCCTGTTTAAGCCACCACAACAAGGTTTTGGATTTCTTGGAACAACCACTGCCCCAGAATCATGGGGCAATTGTTGA 1497 0.4476 MSNSTSLSEEASVSSGTRIQDFGATLNHVVSTISPPQQIPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARISANQHQLLTTTTPSNPLLQSLFLFPTQQHHQTFQNNFINNNNNINHPWDPQSSSQDQNPNPNNNNNNNFPPPPPPTITIKPEAQNFHIPNSDNAPPLFLHQNQNKNNNNMMMTSPFRNNPHVRMQPQSNNANSNAAAAATSAHLSATALLQKAATVGAAAITGSNASLGVGHHVTELGNMTQLDSVHFMNNMGGFSNNNVKSLKSSDDLTRDFLGLTGDANGEGGGNSRANGGTVDVSMNMKDMLTYTGNIDYPHQRQHHHHGQQLLFKPPQQGFGFLGTTTAPESWGNC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151978g00001 498 FunFam protein indeterminate-domain 12-like 52 121 - -
Stsc151978g00001 498 MobiDBLite consensus disorder prediction 245 317 - -
Stsc151978g00001 498 Pfam Zinc finger, C2H2 type 73 95 IPR013087 -
Stsc151978g00001 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 445 IPR031140 -
Stsc151978g00001 498 MobiDBLite consensus disorder prediction 31 55 - -
Stsc151978g00001 498 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Stsc151978g00001 498 MobiDBLite consensus disorder prediction 273 287 - -
Stsc151978g00001 498 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Stsc151978g00001 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Stsc151978g00001 498 MobiDBLite consensus disorder prediction 245 272 - -
Stsc151978g00001 498 Gene3D Classic Zinc Finger 52 122 - -
Stsc151978g00001 498 SUPERFAMILY beta-beta-alpha zinc fingers 72 170 IPR036236 -
Stsc151978g00001 498 Gene3D Classic Zinc Finger 127 208 - -
Stsc151978g00001 498 MobiDBLite consensus disorder prediction 291 317 - -
Stsc151978g00001 498 SMART c2h2final6 150 170 IPR013087 -
Stsc151978g00001 498 SMART c2h2final6 73 95 IPR013087 -
Stsc151978g00001 498 SMART c2h2final6 115 145 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151978g00001 Stsc-Chr151978 8036 13036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151978g00001 10 221 IDZ Gene Family AT4G02670 74.537 2.59e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151978g00001 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151978g00001 K25870 - gmx:100812496 549.28