Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151976g00005 ATGGAACAATTTAGACAGATTGGTGAGGCATTGGGGAGTTTGAAGGCTTTGATGTTATTCAAAGAGAAAATTCAAATTAATCAAAGACAGTGTTGTCTTGTTCTTGATGTGTTCACCTTTGCATATGATACTATTGCAGATGAGATCAAACACAACCTCAAATTTGAAGAGAGGAATGTGAAATGGAAAGGATTAGAACAACCTTTGAAGGAGATTCATAAGATCTTCAAAGAAGGCGAATCATATGTCAGGAATTGTTTGGAAACAAAGGATTGGTGGGCTAAGGCTATTATATTGTGTCACAACACTGATTCTGTTGAGTTGCATATACATAACTTGCTTTGTTGCATGCCATTTGTGATTGAAGTGATTGAATCGGCCGGAGAAGCTTCAGGGACCGATCAGGACGACACGAATAAGAGGAAGTGGATACTTCAACAGAAAATGCATGAGAAGAAGATGGCAGGAACAACAAAGCAAGAGAAGAGATTGATAGAACTCATTTTGAAGAATTTGCAAGAATCATGTGAAGTGAAGCTTATTCCAAGTTCAACATTGGTTGGATCTAAGGACTTCCAGGTTAAGAGAAGGATGGGGAATGGACAGTACAAGGAGATTGCGTGGCTAGGCGAAAGCTTCGTGATAAAGCATTTTACCGGAGAAATCGAAGCTATGGAGCCGGAGATCAGAGAAGTTTTGTCTCTTTCCCATCCAAACATAATGGATTGTCTTTGTGGTTTCACTGATGATGACAAGAAAGAATGTTTCTTGCTTATGGAACTTATGAGCAAAACATTGAGCACTCACATCAAGGAGATTCACGGCCCGAGGAAGCAAAAACCGTTCTTGCTCCATGTCGCGATTGATGTTCTGCTTCAGATCGCGAGAGGAATGGAATACCTGCATTCAAAGAAAGTTTATAATGGAGAGCTAAATCCTTCAAACATTCTTGTTAAGCCAAGAGGTAACTTGCCTGATGGTTACTTGCACGCCAAGGTAACTGGTTTTCGCCTATCTTCGGCCGTGGAATTTCCCCAGAAAGGAAGTACAAATCAAAATCAGAATGGAGCTTCATTGTTCATCTGGTATGCTCCTGAAGTACTTGAAGAGCAGGAAAATTCCGGGGGTGCCTTGCAATCCAAGTATTCAGAGAAATCTGATGTTTATAGCTTTGGAATGGTTTGCTTTGAGCTTCTAACAGGTAAAGTACCTTTTGAAGATAGTCATCTGCAAGGAGAGAAGATGAGCAGGAATATAAGGGCAGGGGAGAGGCCACTTTTCTCCCCGAATTCGCCGAAATATATCGTCAACTTGACAAAGAAATGTTGGCATACTGAACCGGATCAGCGTCCGAGCTTCTCTTCCATCTGA 1371 0.4121 MEQFRQIGEALGSLKALMLFKEKIQINQRQCCLVLDVFTFAYDTIADEIKHNLKFEERNVKWKGLEQPLKEIHKIFKEGESYVRNCLETKDWWAKAIILCHNTDSVELHIHNLLCCMPFVIEVIESAGEASGTDQDDTNKRKWILQQKMHEKKMAGTTKQEKRLIELILKNLQESCEVKLIPSSTLVGSKDFQVKRRMGNGQYKEIAWLGESFVIKHFTGEIEAMEPEIREVLSLSHPNIMDCLCGFTDDDKKECFLLMELMSKTLSTHIKEIHGPRKQKPFLLHVAIDVLLQIARGMEYLHSKKVYNGELNPSNILVKPRGNLPDGYLHAKVTGFRLSSAVEFPQKGSTNQNQNGASLFIWYAPEVLEEQENSGGALQSKYSEKSDVYSFGMVCFELLTGKVPFEDSHLQGEKMSRNIRAGERPLFSPNSPKYIVNLTKKCWHTEPDQRPSFSSI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151976g00005 456 Pfam Protein tyrosine and serine/threonine kinase 222 456 IPR001245 GO:0004672|GO:0006468
Stsc151976g00005 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 190 456 - -
Stsc151976g00005 456 Gene3D Transferase(Phosphotransferase) domain 1 170 456 - -
Stsc151976g00005 456 SUPERFAMILY Protein kinase-like (PK-like) 184 456 IPR011009 -
Stsc151976g00005 456 ProSiteProfiles Protein kinase domain profile. 192 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151976g00005 456 FunFam Kinase family protein 189 456 - -
Stsc151976g00005 456 Pfam Protein of unknown function (DUF1221) 142 189 IPR010632 -
Stsc151976g00005 456 Pfam Protein of unknown function (DUF1221) 21 142 IPR010632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151976g00005 Stsc-Chr151976 19509 21008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151976g00005 216 456 MAP Kinase Kinase Kinase AT5G58950 27.869 2.62e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_Gdt Stsc151976g00005 PK_Tyr_Ser-Thr 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151976g00005 - - gmx:100813704 698.738