Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151976g00003 ATGACTCCAAATGGTGGAACAGGAACTGAGGAACAACAACAACAGCAACAACAACAACAACAACAACACAAGAGGAAGGTGTTTGATTCTTTGCTCAAACCAAATGTTCAAAAGTCACCAAGATTGTGCACAACTATTAGGGAAGGTTGGCCGGAGATCTTGGAAAATGAGGATAACAACTTGAGTAGATGTGTTGGTTCTTTAGCTGGATCTGGACCACCTAGTACTAGTTATTGTTCCATGACAGATTCTGCTCACATTATTGAAGATATAACTGTGAAAACTCATAATAAGAACCTTAATTTCTTCCCTCAGAGGAATCAATTAGCTATTGAGTCTAGGTATAGTAGCTTGACTAGGGAGATTCTGCCACAAGATGAAGAGCAGATACCATTGAGACTAAGCAAAGGGGTTAAGGGAATTGATTCCGAATTTCGGAGCCTGAAATCGTCACTGAGAGTTTCTTCGAATCGAAGCAATGTGGACAAGATCTTTACCTCAAGCAATGGCCTTGTTATTAATGGCACTACTCAGAATGCTTCATCAGCATATAGTGTTTCTCATTTGATTTTGAAGCAAACCGTGAAGGGAAAGGGAGTTATTTGCAAGGACTTCGACGGAAGAATTGGTCCTGCAGGAGCAGTACTTATGAGGCAGGAGGAGGATGAGTCTCAATCTGATATGCCGAGACCAGATGCGACCGATAAGATGCCTTCCCTGCAAGTAAATGTCAAGTCCGGCACAGGCTCCTCGAATGATGGGATGAACTTGAGAGAGTGGCTGAGGCCACAAGATCTTAAGATAGATAAATCAGGAAGGATACAAATATTCAAGCAGATCCTGGAATTGGTTGATTTTGCACATTCCCAAGGTGTTGTCATGCTAAACTTAAGACCATCTTGTTTCACTCTATCACCTTCTTCGAGTAAAATCAAGTACATCGGTTCATCTGGCCGACAAGAGTTGCATAAATTCTTGACTTGCAATGTGAAGAAAAGAATGTCTCTAGAACAAGATGCCGGTGTGAGCCAAATTTTGAGAATGAAGCAGCAAAATCCCTACCAAGAGACGAGATCTCTTCGGCATCATCATCATTTCACTTCCATTCATGGATGCAGGACTACAATGGCGAATCAAACCGGATCTTCTGTAAACGATTCCACCGAATTAGAAGAGAAGAAATGCATGTCTTTAATACAGTTAGAAGAGAAATGTTATAGTAGTCCGGAAGAGCTAGATGGCGGGGTTTGCACATTTTCTTCAAATATTTATAGCCTTGGAGTTCTTCTGTTTGAGTTGCTGTGTAATATTGAGTCATGGGAGTTGCATTCAACCGTGATGTCAGATCTATGTCATAGAATCTTACCACCAAGATTTCTGTCAGAAAATCCAAAGGAAGCTGGTTTTTGTCTTTGGCTTCTTCATCCTGATCCGTCTTCTCGCCCCAATACCAGGATGATTTTAGAGTCTCAGTTTATAGTTGAATCAGACAAATCAAATTCCTCAGATGATGTTTCGCCAGTTGGAGTGTCGGATGATGATGAAGCCGAAACACAGCAATTACTACATTTTCTAGTCACACTTCAAGATGAAAAGAAAAAACAGGAATCAAAGTTAGTAGAAGAGCTAAGTTGGTTGGATGAAGATATTAAGTTGGTAGAAAGAAGTAATTCGGTCGAGGCAGATTCGCTGTTCCCTTCGAAACAAGTGAACTATCCTGAATTGACAGGAAGCAGTTACCATTTTCCAGAACACGCCATTTCAAGTGCTAATGAGGCAAGATTCTTGAGCAACATAAATCAGCTAGAGAGTTCTTACTTTTCGATGAGATGCCAAATGCTACTCAAAGATACTTCAGCCGTCGCAAACTTTGATAAAGATGTGATTGAAAGTAGATATAGACTGCCTCATGCCGAGAATGTTATTAAGGAGCCAAGTAGAGTTCAGAGTTCTGCTGGTTCTTTAGGAACCTTCTTTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTCGAAGAACGCGGCACATTGAGGAATAGAGATCTGCTTAGCTCTGCCAATGTGATATGTGCTTTGAGTTTTGACCGTGACGAGGATTACATCGCAGCAGCCGGAGTTTCAAAGAAGATCAAGGTTTTTGACTTGAGTAGTATTATGAGTGATTCTGTTGACATCCAGTACCCGGTAGTTGAGATGTCGAATAAATCGAAGCTTAGCTGTGTGTGCTGGAACAGCTACATTAAAAATCATCTGGCTTCTACCGATTATGATGGTGTCGTTCAGATGTGGGATGCAGGCACTGGTCAGCCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTAGAAACTCTGTAGGAACCATATGGAACCCTGCCAATGTATGCTGTGTTCAGTTCTCCAGTTTCTCAACACACCTTTTGTTCTTTGGTTCAGCTGATTACAAGGTCTACGGCTACGATCTTCGCCACACTCGAGTCCCTTGGTGCACCTTAGGTGGTCATGCAAAAGCTGTTAGCTATGTAAAATCTGTAGATGCCGAAACAGTTGTTTCTGCTTCCACTGACAACTCTTTGAAGCTATGGGACCTGAAGAAAGCAAGTTCTTCTGGTTTGTCATCTGATGCTTGTGCCTTAACATTCAAAGGTCATAGTAATGAAAAGAACTTTGTAGGTTTATCCGTTTCGGATGGATACATTGCATGCGGTTCAGAAACTAATGAGGTATATTGTTATCACAAGTCACTGCCATTGCCAATCACTTGTCACAAATTTGAATCCATCGATCCCGTTTCTGGTCATTCGACTAGCGATGACAATAATGGACAGTTTGTTTCTAGTGTCTGCTGGAGAAAGAAGTCTAATATGCTTGTTGCCGCCAACTCGATCGGAATCGTCAAACTGCTACAGATGGTTTGA 2922 0.4158 MTPNGGTGTEEQQQQQQQQQQQHKRKVFDSLLKPNVQKSPRLCTTIREGWPEILENEDNNLSRCVGSLAGSGPPSTSYCSMTDSAHIIEDITVKTHNKNLNFFPQRNQLAIESRYSSLTREILPQDEEQIPLRLSKGVKGIDSEFRSLKSSLRVSSNRSNVDKIFTSSNGLVINGTTQNASSAYSVSHLILKQTVKGKGVICKDFDGRIGPAGAVLMRQEEDESQSDMPRPDATDKMPSLQVNVKSGTGSSNDGMNLREWLRPQDLKIDKSGRIQIFKQILELVDFAHSQGVVMLNLRPSCFTLSPSSSKIKYIGSSGRQELHKFLTCNVKKRMSLEQDAGVSQILRMKQQNPYQETRSLRHHHHFTSIHGCRTTMANQTGSSVNDSTELEEKKCMSLIQLEEKCYSSPEELDGGVCTFSSNIYSLGVLLFELLCNIESWELHSTVMSDLCHRILPPRFLSENPKEAGFCLWLLHPDPSSRPNTRMILESQFIVESDKSNSSDDVSPVGVSDDDEAETQQLLHFLVTLQDEKKKQESKLVEELSWLDEDIKLVERSNSVEADSLFPSKQVNYPELTGSSYHFPEHAISSANEARFLSNINQLESSYFSMRCQMLLKDTSAVANFDKDVIESRYRLPHAENVIKEPSRVQSSAGSLGTFFEGLCKFARYSKFEERGTLRNRDLLSSANVICALSFDRDEDYIAAAGVSKKIKVFDLSSIMSDSVDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSRNSVGTIWNPANVCCVQFSSFSTHLLFFGSADYKVYGYDLRHTRVPWCTLGGHAKAVSYVKSVDAETVVSASTDNSLKLWDLKKASSSGLSSDACALTFKGHSNEKNFVGLSVSDGYIACGSETNEVYCYHKSLPLPITCHKFESIDPVSGHSTSDDNNGQFVSSVCWRKKSNMLVAANSIGIVKLLQMV 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151976g00003 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 833 873 IPR001680 GO:0005515
Stsc151976g00003 973 ProSitePatterns Trp-Asp (WD) repeats signature. 851 865 IPR019775 -
Stsc151976g00003 973 SMART serkin_6 183 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151976g00003 973 MobiDBLite consensus disorder prediction 239 256 - -
Stsc151976g00003 973 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 833 866 - -
Stsc151976g00003 973 Gene3D - 785 973 IPR015943 GO:0005515
Stsc151976g00003 973 Gene3D - 658 784 IPR015943 GO:0005515
Stsc151976g00003 973 MobiDBLite consensus disorder prediction 219 256 - -
Stsc151976g00003 973 SUPERFAMILY Protein kinase-like (PK-like) 253 492 IPR011009 -
Stsc151976g00003 973 Gene3D Transferase(Phosphotransferase) domain 1 253 505 - -
Stsc151976g00003 973 ProSiteProfiles Protein kinase domain profile. 158 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151976g00003 973 PANTHER PROTEIN SPA1-RELATED 2 12 783 IPR044630 GO:0009640
Stsc151976g00003 973 Pfam WD domain, G-beta repeat 832 864 IPR001680 GO:0005515
Stsc151976g00003 973 MobiDBLite consensus disorder prediction 1 25 - -
Stsc151976g00003 973 SMART WD40_4 925 971 IPR001680 GO:0005515
Stsc151976g00003 973 SMART WD40_4 725 764 IPR001680 GO:0005515
Stsc151976g00003 973 SMART WD40_4 826 864 IPR001680 GO:0005515
Stsc151976g00003 973 SMART WD40_4 679 714 IPR001680 GO:0005515
Stsc151976g00003 973 SMART WD40_4 783 822 IPR001680 GO:0005515
Stsc151976g00003 973 SMART WD40_4 875 914 IPR001680 GO:0005515
Stsc151976g00003 973 SUPERFAMILY WD40 repeat-like 689 969 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151976g00003 Stsc-Chr151976 13239 18471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151976g00003 279 493 AGC Kinase Gene Family AT3G25250 25.112 1.12e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151976g00003 K16240 - gmx:100799267 1190.64