Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151962g00001 | ATGCCTCGTGGAACTCTTCAAGTCATTCTTGTCAGCGCAAAAGGTCTTAAGGACGCTGATTTTCTCGGAAAAATGGATCCTTATGTGATTCTGACTTATCGAGCACAGGAGAATAGAAGCAGCGTGGCAAAAGGTGGAGGATCTAACCCTCGTTGGAATGAGAGTTTTCTTTTCACGGTTTCTGATAATGTTGCTGAGCTTAATCTGAGGATTATGGACAAAGATACTTTTACAAAGGATGATTTTGTTGGTGAGGCAAGAATTCCCTTAGAACCAGTTTTTGCTGCGGGTAGCATTCCTGAAACTTCTTACAATGTTGTTAAGAAGCAGAATTACTGTGGGGAGATTAGGCTGGCTCTCACTTTTAATCCTGAGTGGTAA | 381 | 0.4173 | MPRGTLQVILVSAKGLKDADFLGKMDPYVILTYRAQENRSSVAKGGGSNPRWNESFLFTVSDNVAELNLRIMDKDTFTKDDFVGEARIPLEPVFAAGSIPETSYNVVKKQNYCGEIRLALTFNPEW | 126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151962g00001 | 126 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | 124 | IPR035892 | - | |
| Stsc151962g00001 | 126 | Pfam | C2 domain | 4 | 101 | IPR000008 | - | |
| Stsc151962g00001 | 126 | PANTHER | C2 DOMAIN-CONTAINING | 1 | 123 | - | - | |
| Stsc151962g00001 | 126 | Gene3D | C2 domain | 2 | 125 | IPR035892 | - | |
| Stsc151962g00001 | 126 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Stsc151962g00001 | 126 | SMART | C2_3c | 5 | 102 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151962g00001 | Stsc-Chr151962 | 1623 | 3445 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151962g00001 | 4 | 97 | C2H2 Transcription Factor Family | AT4G21160 | 35.106 | 1.41e-14 | 66.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc151962g00001 | - | - | ahf:112794411 | 223.402 |