Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151954g00002 ATGATCGTGAGCCAGAACATGGTAGCGGAAGCGGAGATTATCTGTAAGCAGAGTATTTCGATGCTGGACATGAAGTATCATCTGTGCGTGGCGCAAGAACAAAACGTTAAGATTGAGGTCTCACCAACCTCTCCTTCTGTCCCCATCTTTGGTCAAGATGCATGCTCTGAGGTTCAAGACTCCATTATGGAGACTCCTGTGATTGAGTTTGTTCCAAATGTGCGTTCGGGTAGCTTTGCAGAGATTGGACCACGTGTATCTATGGATGATGAACACATTTGCATAGATGATCTAGCTGCCCACCTTGGATTTGTGTTCAAGTATCCAATACCGAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGAAGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGGCATTTGCTGGTTGCTAATGCTGGCGACTGTCGAGCAGTTCTTTGCAGGAGAGGTAAAGCTGTAGAGATGTCTCAAGATCATAGGCCGGGTTATTTACCAGAAAGGAGGAGAGTTGAGGAGTTGGGCGGCTTCATTGACGATGGATATCTTAATGGTTATCTTTCCGTGACTCGTGCCCTTGGTGATTGGGACTTCAAGTTTCCACTCGGTATTGCGTCCCCTCTTATAGCAGAGCCAGATGTTCAGCTGGTTACATTGACCGAAGATGATGAGTTCTTAATAATTGGGTGTGACGGGATCTGGGATGTTATTTCCAGCCAAGTTGCCGTTAGCCTTGTTCGTCGAGGATTAAGAAGGCACGACGACCCACAACAATGTGCACGAGAACTGGTGAAGGAAGCATTGCGCCTAAATACATCAGATAATCTTACTGTGATTGTCATATGCTTGTCCACCGTCCAAAGCATTGTTGAATCATGCTCTTCACCCTGGAGGAGAAGATTCAAGGCTTGTAACGTGTCGGAAGAGGCCCGTAATTGA 948 0.4641 MIVSQNMVAEAEIICKQSISMLDMKYHLCVAQEQNVKIEVSPTSPSVPIFGQDACSEVQDSIMETPVIEFVPNVRSGSFAEIGPRVSMDDEHICIDDLAAHLGFVFKYPIPSAFYAVFDGHGGPEAAAFVKRNAMRHLLVANAGDCRAVLCRRGKAVEMSQDHRPGYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDFKFPLGIASPLIAEPDVQLVTLTEDDEFLIIGCDGIWDVISSQVAVSLVRRGLRRHDDPQQCARELVKEALRLNTSDNLTVIVICLSTVQSIVESCSSPWRRRFKACNVSEEARN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151954g00002 315 Gene3D - 55 136 IPR036457 -
Stsc151954g00002 315 Pfam Protein phosphatase 2C 136 278 IPR001932 -
Stsc151954g00002 315 Gene3D - 137 294 IPR036457 -
Stsc151954g00002 315 SUPERFAMILY PP2C-like 67 287 IPR036457 -
Stsc151954g00002 315 PANTHER PROTEIN PHOSPHATASE 2C 64 133 IPR015655 GO:0004722|GO:0006470
Stsc151954g00002 315 CDD PP2Cc 74 286 IPR001932 -
Stsc151954g00002 315 ProSiteProfiles PPM-type phosphatase domain profile. 75 286 IPR001932 -
Stsc151954g00002 315 SMART PP2C_4 65 284 IPR001932 -
Stsc151954g00002 315 ProSitePatterns PPM-type phosphatase domain signature. 114 122 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151954g00002 Stsc-Chr151954 3869 5627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151954g00002 53 287 PP2C-type Phosphatase Gene Family AT2G33700 47.887 2.04e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Stsc151954g00002 PP2C 8e-49 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151954g00002 K14803 - qsu:112022346 344.739