Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151948g00002 ATGATAATAAAGCGCAGCTTGAAAGCCAGAATCCCCACCCTCAAACCCTGTATTAACCAAACACAATCCAAGAAGCGCAAGCTCAACCAACTTTACACTCAACCCATCCCAACGCCACCTCTTCTTCCACACCACTTCACCTTCCCTTCTCTTTCAAAATCACCGAGACGCCGCACTAGGATTCTTCCCTCCAGGTTCAGCGATTCTGTTCTTGACACGTGGACGCACGCTGATGAGGAAACCAGATTCCCGTTTGTGAAGCCGAAGATCAATAACACCGCCGAATCTGAATCTGAATGGCCTGCCACGGCCTTTAATGATTCGAACTACGACAACTGTCTCAATTCAGTTAAGACAGTTAAAACAAGTGTTAACGGAGTCCGTTCTACTCTCGTCAAAAGGAATTCCGGAGCTGGTAGTAGAAAGAGGAATGACGTGTACAAGCTGGACGACTTTGTTTTGGGTGACATAGTTTGGGCAAAATGCGGGAAGCGCTACCCTGCTTGGCCTGCTCTCGTTATCGATCCTCTCTTGCAAGCTCCCAAATCCGTTCTCAGTTGCTGTGTTCCCGGCGCAATTTGCGTTATGTTCTTTGGCTATTCCAAAAACGGAAAGCAGCGGGATTATGCGTGGGCGAAGCAGGGAATGGTATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCAGGCTCAGTTGTACAAGAGCAAGATAAGGGAGTTTCAATTGGCTATGGAGGAGGCTATGTTGGCAGAAGATGGCATTCTGGACATGCAATTGCGATCTGAGCAAATTGGTGATCTTGAAGTTAATCCCGGAGAGTATATGAAAGGTGCAGATTCCCATGCTGAGCAAGAGCATTACCGCCAAGGCCAGGATGTGATATCATGTGCTGGCTGCGGTTTGATGTTGCGGGCTAAACCCAAGAAGAAGACAAAAGATTCATCTATACCTTATTGTAAACATTGTGATAAGTTACAAAAGTCAAAACAATATTGCGGAATTTGCAAGAAGATTTGGCACCACTCGGATGGTGGGAATTGGGTATGCTGCGATGGTTGTAATGTTTGGGTGCATGCTGAATGTGATAAAATTTCCAGCAAACTTCTCAAGGATTTGGAAAATATGGATTACTATTGCCCAGACTGCAAGGGAAAGTTCAATTGTAAATTAACAGCACCGCAAATATACAAGTCAAAAATAAAATCAACAGAGAATAGTAAAAGCCCTGCAATACCTGAAGAGCTAGCGGTGGTATGCAATGACATCAAAGGAATTTACCTTCCAAAGCTTCATTTGGTTATGTGCAAGTGCAGCTCTTGCGGTAGTACAAGAAAGCATAAGCTCCCTGAATGGGAACGACATACAGGTTGCAAAGCCAAAAAATGGAAACATAATGTGAAAGTGGAAAACACAATGCTACCGCTAATAAAATGGATCACCAAGCACAATTCACAAGCTGGACCTCACTTGGATCAGCAGCAGTTGATTTCCTTCTTGCAAGAGAAGTATGAGCCAGTTTATGCAAAATGGACCACAGAAAGATGTGCCATTTGTAGATGGGTTGAAGACTGGGATGACAACAAAATTATTATCTGTAACAGGTGCCAAATTGCTGTCCACCAAGAGTGCTATGGGGCAAAGAATGTTAAGGATTTTACTTCGTGGGTTTGTAGAGTCTGTGAAACTCCTGACATTGAGAGAGAGTGTTGCCTCTGTCCCGTAAAAGGTGGTGCTCTTAAGCCGACGGACGTGGACTTGCTGTGGGTTCACGTAACATGTGCTTGGTTTCAGCAGGAAGTTCTGTTCAGAGACCACGAGGCAATGGAACCAGCTGTTGGAATCCTTAAAATTCCCCCTGAATCTTTTCTTAAGACTTGCGTGATATGTAAACAAAGGCATGGTTCATGTACAAGTTGTTGCAAGTGCGCTACATATTTTCACGTTACGTGTGCGTCAAGAATGGGATATAGCATGGAATTGCATTCTATTGAGAAGAATGGGAAACAAAAAACACAGAAGCTAATTTATTGTAAATTTCACAGGGTGCCAAAACCAGAGGCAGTACTAGTTGTACATACAGCGGATGGAGTATTCTCTCAAAATAAGGAGGGGTGCTTTAAGGGATCAAGGCTCGTTTCATCATCTAACAATGTGGAACTCCTTGTTGACTCCTCAAAATCTCATATTTATGAGGTTGAGCCACTCTCTGCCGCCAGGTGTCGTGTCTACATAAGGTCTTCCAAGAAGAGCGATGCTGTCCCAGTAATGCACTTGCTTGGGGGGCCAAACCTCCATTCTTTAGATGCTATAGCTAAACTGGCCAGAAACGAGGATGCTGAATCATTTTCTTCTCTCAAAGAACGTCTACACCATTTACAGAAAACCGAAAGCAGTAGAGTTTGCTTAGGAAAATCGGGTGTCCATGGATGGGGCCTCTTTGCTCGAAGAGAATTACAAGAAGGAGAAATGGTTGTTGAGTACCGTGGCGAGCAAGTAAGGCGCAGTGTTGCTGATCTGAGGGAAGCTAAGTATCGTTTAGAAAGCAAAGACTGTTATCTGTTTAAGATTAGTGAGGACGTGGTAATTGACGCAACTGAAAAGGGCAATATTGCACGTTTGATAAACCATTCTTGCAACCCGAACTGTTATGCAAGGATAATGAGTCTGAACGAACAAGAGAGTCGGATTGTTCTTATTGCCAAGACAGATGTTTCTGCTGGGGAAGAATTAACGTATGATTACTTGTTCGATCCAGACGAGCGGGACGAACTCAAAGTTCCCTGCCGCTGTGGAGCCCCCAATTGTAGGAAGTTTATGAACTAG 2826 0.4423 MIIKRSLKARIPTLKPCINQTQSKKRKLNQLYTQPIPTPPLLPHHFTFPSLSKSPRRRTRILPSRFSDSVLDTWTHADEETRFPFVKPKINNTAESESEWPATAFNDSNYDNCLNSVKTVKTSVNGVRSTLVKRNSGAGSRKRNDVYKLDDFVLGDIVWAKCGKRYPAWPALVIDPLLQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWAKQGMVFPFLEFMDRFQGQAQLYKSKIREFQLAMEEAMLAEDGILDMQLRSEQIGDLEVNPGEYMKGADSHAEQEHYRQGQDVISCAGCGLMLRAKPKKKTKDSSIPYCKHCDKLQKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLLKDLENMDYYCPDCKGKFNCKLTAPQIYKSKIKSTENSKSPAIPEELAVVCNDIKGIYLPKLHLVMCKCSSCGSTRKHKLPEWERHTGCKAKKWKHNVKVENTMLPLIKWITKHNSQAGPHLDQQQLISFLQEKYEPVYAKWTTERCAICRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDIERECCLCPVKGGALKPTDVDLLWVHVTCAWFQQEVLFRDHEAMEPAVGILKIPPESFLKTCVICKQRHGSCTSCCKCATYFHVTCASRMGYSMELHSIEKNGKQKTQKLIYCKFHRVPKPEAVLVVHTADGVFSQNKEGCFKGSRLVSSSNNVELLVDSSKSHIYEVEPLSAARCRVYIRSSKKSDAVPVMHLLGGPNLHSLDAIAKLARNEDAESFSSLKERLHHLQKTESSRVCLGKSGVHGWGLFARRELQEGEMVVEYRGEQVRRSVADLREAKYRLESKDCYLFKISEDVVIDATEKGNIARLINHSCNPNCYARIMSLNEQESRIVLIAKTDVSAGEELTYDYLFDPDERDELKVPCRCGAPNCRKFMN 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151948g00002 941 SMART PostSET_3 925 941 IPR003616 -
Stsc151948g00002 941 SMART set_7 799 922 IPR001214 GO:0005515
Stsc151948g00002 941 CDD PWWP_AtATX3-like 153 254 - -
Stsc151948g00002 941 Gene3D SET domain 780 941 IPR046341 -
Stsc151948g00002 941 ProSiteProfiles Zinc finger PHD-type profile. 330 386 IPR019787 -
Stsc151948g00002 941 Pfam PHD-zinc-finger like domain 569 681 - -
Stsc151948g00002 941 SUPERFAMILY FYVE/PHD zinc finger 329 392 IPR011011 -
Stsc151948g00002 941 ProSiteProfiles Zinc finger PHD-type profile. 513 564 IPR019787 -
Stsc151948g00002 941 ProSiteProfiles PWWP domain profile. 154 223 IPR000313 -
Stsc151948g00002 941 ProSiteProfiles Post-SET domain profile. 925 941 IPR003616 -
Stsc151948g00002 941 FunFam Histone-lysine N-methyltransferase 774 941 - -
Stsc151948g00002 941 SUPERFAMILY FYVE/PHD zinc finger 514 578 IPR011011 -
Stsc151948g00002 941 PANTHER PHD FINGER PROTEINS 56 364 - -
Stsc151948g00002 941 ProSitePatterns Zinc finger PHD-type signature. 516 561 IPR019786 -
Stsc151948g00002 941 FunFam Histone-lysine N-methyltransferase 565 684 - -
Stsc151948g00002 941 SUPERFAMILY SET domain 793 938 IPR046341 -
Stsc151948g00002 941 ProSiteProfiles Extended PHD (ePHD) domain profile. 567 682 IPR034732 -
Stsc151948g00002 941 ProSiteProfiles SET domain profile. 799 916 IPR001214 GO:0005515
Stsc151948g00002 941 SMART PWWP_4 152 221 IPR000313 -
Stsc151948g00002 941 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 2 941 IPR025780 -
Stsc151948g00002 941 Pfam PHD-finger 332 385 IPR019787 -
Stsc151948g00002 941 SMART PHD_3 515 562 IPR001965 -
Stsc151948g00002 941 SMART PHD_3 332 384 IPR001965 -
Stsc151948g00002 941 SMART PHD_3 626 682 IPR001965 -
Stsc151948g00002 941 CDD PHD_ATX3_4_5_like 515 561 IPR042011 -
Stsc151948g00002 941 SUPERFAMILY Tudor/PWWP/MBT 150 288 - -
Stsc151948g00002 941 Pfam SET domain 810 915 IPR001214 GO:0005515
Stsc151948g00002 941 CDD SET_SETD1-like 788 937 - -
Stsc151948g00002 941 Gene3D - 148 254 - -
Stsc151948g00002 941 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 507 564 IPR013083 -
Stsc151948g00002 941 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 683 IPR013083 -
Stsc151948g00002 941 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 385 IPR013083 -
Stsc151948g00002 941 Pfam PHD-finger 528 562 - -
Stsc151948g00002 941 Pfam PWWP domain 155 251 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151948g00002 Stsc-Chr151948 10377 15842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151948g00002 516 668 C2H2 Transcription Factor Family AT3G14740 36.250 2.62e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc151948g00002 zf-HC5HC2H_2 4.4e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151948g00002 - - lja:Lj1g3v5034780.1 1276.54