Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151947g00001 ATGGAGCAACAGCAGCTTCAGCTCAGCGGAACTGCCACCGCCGGACCAGCACAGTCGGACCAGGGACCTAGGGATTTGGCAGATTCGAAGCTCCTTCGAGTTCCCGTTGCGGTTGCCGCCGATGTTCTCATGACGGACAGGGACGGCGACGGGAGTGTTCCCAATCCGGAAGTGGCCGGCGCCCCGGCAGTTAAGAGGAAGCGGGGCCGTCCGGCGAAGGGTGCTCCGAGGGCGGTGGCGGCTGGAGCTCCCCCGAGGCAGCAGCAGAAGAAGGAGGAGGAGGAAGAGGAGGATGTTTGCTTCATATGCTTCGATGGCGGAAGCTTAGTTCTTTGTGATCGCCGGGGTTGTCCTAAAGCGTATCATCCCGCGTGTATCAAGCGAGACGAGGCCTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCCTCCCATTTTATGTGCTATACTTGTACATATTCACTGTGCAAGAGTTGTACAAAATATGCTGATTTTGTCTGCGTCAGAGAAAATAAAGGTTTGTGCGGAATATGCATGAGAACCATAATGCTGATTGAAAACAGTGCCCAGGCAAATAGGGAGAAGGTGTATTGGATCTTTTTGAAAGAGAAGATATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCCTGGACAGGTGTTTCTCCGTTGGGTGGTAAGGTTGAAGGTCCCCGTGAAATTTATAATACCAAGGATGGCAAAGGTTCTGGTTCAGAGAACTCCTGTATAGACTTAGAATCAAATAATTTGAAAAACAAGAAATCTAGGAGACAGCCAATGCTTCATAACAATGGGGTTGGCTTTGATACGATAACTTCAGCCGGTGACAACTGTGTGCCTTCGCCTGAATGTTCAAATTGGGCATCAAAGGAGCTTATAGAGTTCGTTGCACATATGAAAAATGGTGATACATCTCGCCTGTCTCAATTTGATGTCCAGGGGCTCTTGTTAGAATATGTGAAGAAAAACAATCTTCGAGACCCCCAGCAGAAATGCCAAATTGTTTGTGATCATAGACTACTAAAATTGTTTGGAAGGGCGCGTGTTGGCCACATTGAAACGGTAAAGCTCCTTGAACCCCACTTTCTTATAAAAGACAATGGCCCTGCAGAAGACACTCTTAGAGCAGGAGTCGTGGACAATGTTGCTAGCGAAGGGGAGGTCAAAGACAATTGCAGTAAGCAGTTGATGCTAGTTGATGATAAGGAATGTAAAACAGATATAAAAGCTGATGTGCATTTGCCACAAAATAATCCAGACGTGTATGCTGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGGAGTCTTATGGAAAATCTAACTGAAGATTCTGAAACTGTTCGTGACAAGGTTGTTGGTTCATTTGTGCGGATAAGGATCACTAGTAGTGACAAAAAACAAGAGATGTACAGGCTTGTCCAAGTTGTAGGTACAAGTAAGGCTGCTGAACCTTACAAAATTGGAAGTAGAACAACTGATACGATGCTTGAGATTTTAAACTTAAATAGGAAGGAGGCCATATCAATAGATGAGATTTCAAATGAGGAGTTCTCTGAGGATGAATGCAAGCGTTTGCGTCAAAGTATAAAATATGGTCTTTCCAATAGATTGACTGTGGGTGAGATTATGGACAAAGCACTGACATTTCAAGCAATGAGAGTTAATGATTTGCTGGAAGCTGAGATACTGCGGCTTACTCATCTTCGTGATAGAGCAAGTGAAAAAGGGCATAGAAAAGAATATCCTTAA 1809 0.4494 MEQQQLQLSGTATAGPAQSDQGPRDLADSKLLRVPVAVAADVLMTDRDGDGSVPNPEVAGAPAVKRKRGRPAKGAPRAVAAGAPPRQQQKKEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASHFMCYTCTYSLCKSCTKYADFVCVRENKGLCGICMRTIMLIENSAQANREKVYWIFLKEKISLTFDELLRAKNPWTGVSPLGGKVEGPREIYNTKDGKGSGSENSCIDLESNNLKNKKSRRQPMLHNNGVGFDTITSAGDNCVPSPECSNWASKELIEFVAHMKNGDTSRLSQFDVQGLLLEYVKKNNLRDPQQKCQIVCDHRLLKLFGRARVGHIETVKLLEPHFLIKDNGPAEDTLRAGVVDNVASEGEVKDNCSKQLMLVDDKECKTDIKADVHLPQNNPDVYAAINAHNINLIYLRRSLMENLTEDSETVRDKVVGSFVRIRITSSDKKQEMYRLVQVVGTSKAAEPYKIGSRTTDTMLEILNLNRKEAISIDEISNEEFSEDECKRLRQSIKYGLSNRLTVGEIMDKALTFQAMRVNDLLEAEILRLTHLRDRASEKGHRKEYP 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151947g00001 602 SUPERFAMILY SWIB/MDM2 domain 304 380 IPR036885 -
Stsc151947g00001 602 CDD PHD5_NSD 99 144 - -
Stsc151947g00001 602 Pfam SWIB/MDM2 domain 306 379 IPR003121 -
Stsc151947g00001 602 SMART rtf1 441 551 IPR004343 GO:0003677
Stsc151947g00001 602 ProSiteProfiles Plus3 domain profile. 441 574 IPR004343 GO:0003677
Stsc151947g00001 602 SUPERFAMILY FYVE/PHD zinc finger 68 144 IPR011011 -
Stsc151947g00001 602 FunFam Zinc finger CCCH domain-containing protein 19 88 189 - -
Stsc151947g00001 602 Gene3D - 442 571 IPR036128 GO:0003677
Stsc151947g00001 602 CDD SWIB-MDM2_like 304 379 - -
Stsc151947g00001 602 MobiDBLite consensus disorder prediction 45 92 - -
Stsc151947g00001 602 Pfam Plus-3 domain 446 549 IPR004343 GO:0003677
Stsc151947g00001 602 SUPERFAMILY Plus3-like 442 569 IPR036128 GO:0003677
Stsc151947g00001 602 ProSiteProfiles SWIB/MDM2 domain profile. 298 381 IPR003121 -
Stsc151947g00001 602 FunFam Zinc finger CCCH domain-containing protein 19 442 571 - -
Stsc151947g00001 602 Gene3D SWIB/MDM2 domain 297 387 IPR036885 -
Stsc151947g00001 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 190 IPR013083 -
Stsc151947g00001 602 SMART swib_2 306 384 IPR019835 -
Stsc151947g00001 602 SMART PHD_3 99 145 IPR001965 -
Stsc151947g00001 602 MobiDBLite consensus disorder prediction 1 18 - -
Stsc151947g00001 602 ProSitePatterns Zinc finger PHD-type signature. 100 160 IPR019786 -
Stsc151947g00001 602 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 55 602 - -
Stsc151947g00001 602 MobiDBLite consensus disorder prediction 1 30 - -
Stsc151947g00001 602 Coils Coil 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151947g00001 Stsc-Chr151947 5454 9272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151947g00001 97 185 PHD Transcription Factor Family AT5G36670 34.783 6.31e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Stsc151947g00001 Plus-3 3.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151947g00001 - - aprc:113869503 835.099