Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151943g00002 ATGGCTCCAAAGAGTAATGAAAAGGCAACTAAGAAATCAGTGATGATGATGAATAGAGGGGCATGGACCCCTGAAGAAGATGATAAGCTAGCTCACTTCATTCAAATTCATGGTGCAAAGAGGTGGAAGACTGTTGCAATCAAATCAGGTCTAAAAAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTTAGACCCAATATCAAGAGGGGAAACATAACAATTGAAGAAGAAGACTTGATTCTTAGGCTTCACAAACTTCTAGGAAACAGGTGGTCTCTGATAGCTGGGAGGCTTCCGGGAAGAACAGACAATGAAATCAAGAACTACTGGAATTCTCATTTGTGCAAAAAAGTCAATCAGAATGCAGAAGAGAAACCATCAACTTCATCAACAAAAGAAAGTGGTGTCACACTCAATAATAACCATGATAATATAGAGGACAGTGAAGAAATACTGTTGGAAGAACATAATAAGCTGGGAGCGTCCAATAAAAATGGGAGTGATGATAATTTAGATATTAGCTTCGATGTGAACGAATTTTTTGACTTCTCTACTACTGAAGAATCCTTTGGTTTTGATTGGATAAACAAGTACCTAGATTTTGATGAGAGTCATGAGAGTACAAAAGAAAAAAAAAATGACATGAAATTGAAGTAA 666 0.3679 MAPKSNEKATKKSVMMMNRGAWTPEEDDKLAHFIQIHGAKRWKTVAIKSGLKRCGKSCRLRWLNYLRPNIKRGNITIEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQNAEEKPSTSSTKESGVTLNNNHDNIEDSEEILLEEHNKLGASNKNGSDDNLDISFDVNEFFDFSTTEESFGFDWINKYLDFDESHESTKEKKNDMKLK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151943g00002 221 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Stsc151943g00002 221 SMART sant 71 119 IPR001005 -
Stsc151943g00002 221 SMART sant 18 68 IPR001005 -
Stsc151943g00002 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 66 IPR017930 -
Stsc151943g00002 221 CDD SANT 78 117 IPR001005 -
Stsc151943g00002 221 ProSiteProfiles Myb-like domain profile. 17 66 IPR001005 -
Stsc151943g00002 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Stsc151943g00002 221 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Stsc151943g00002 221 Pfam Myb-like DNA-binding domain 72 117 IPR001005 -
Stsc151943g00002 221 Gene3D - 11 72 - -
Stsc151943g00002 221 Gene3D - 74 146 - -
Stsc151943g00002 221 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Stsc151943g00002 221 FunFam MYB-related transcription factor 18 71 - -
Stsc151943g00002 221 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 13 158 - -
Stsc151943g00002 221 MobiDBLite consensus disorder prediction 123 142 - -
Stsc151943g00002 221 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151943g00002 Stsc-Chr151943 7020 8210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151943g00002 3 204 MYB Transcription Factor Family AT3G13540 46.377 5.96e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151943g00002 Myb_DNA-binding 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151943g00002 K09422 - gmx:100799575 264.618