Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151937g00005 ATGATCTTGAAATTTTGTTTAATAGAGGTCGAGTTCCTGTTACCACCTGGAACAAGACACTATTGGCATCTAATTTACAGCCATCTAATGAGAGCTCTGGGAATTCTGGATTTGTGGTGTTCAATTCAAAATATCTTACGTCGAAAGGAAGCCAACTATTGGGCAATAAAAGTCAACATGCCATCACTTACGGTGAAAGAAATTTCCTTACTCAACACACAACGCAACTTGCTTGTGTTTTTACTGAAGAAGCCTGTGGAGATGGAGAATGGGCTCATGGAAGTTTCCCACTTGAGGAATATATTCAGGCTCTGGACCGTTCGAAGGATGAAATGTACTATAATCATTCCCTTGGCATGCGCTATAATTACAGAGCAAATTTATGTGGGATCATGTATTCAAACAGAAGATGATGTGGAAACTTTATCAAATGTTGAGGGAATTACTGCTGTTCTGAACTTTCAAAGTGGAACTGAAGCTGAAAATTGGGGTATAAATGTAAAATCAATCAATGATTCATGTCAAAGGAACAATATTCTCATGATCAACTATCCCATAAGGGATGGAGATTCATATGATATGAGAAAGAAACTTCCATTTTGTGTGGGGCTACTATTACGGCTGCTTAGGAAGAATCATCGTGTCTTTGTTACTTGCACTTCTGGATTCGATCGGTCTCCTGCTTGTGTGATTGCATACCTGCACTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGCAGACCTGACAGGCCAGCAATTGCATGGGCAACGTGGGATCTTATAGCTATGGTTGAAAGGGGAAAACATGATGGACCTCCCACACATGCCGTCACATTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTGGTGGGAGACTTCACTGGAAACTGGAAAGAACCACTAAAGGCAGTGCACCGGGGTGGATCGAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAATACTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGATAGGGGTAATGTTAACAATATAATTGCCATCGGCGAAACTGCCAGCATTCGGCCTTCAGTTCAGCACCAGCAGAAGGATGCAAATGTTGTGAAGGTAATTGAAAGACCTTTGAATGAAAAGGAGCGGTTTATGCTTGCGAAAGCAGCTCGTTGTATCGCATTCTCTGTCTGTCCTATCAGATTAGCTCCCAAGTAA 1260 0.4198 MILKFCLIEVEFLLPPGTRHYWHLIYSHLMRALGILDLWCSIQNILRRKEANYWAIKVNMPSLTVKEISLLNTQRNLLVFLLKKPVEMENGLMEVSHLRNIFRLWTVRRMKCTIIIPLACAIITEQIYVGSCIQTEDDVETLSNVEGITAVLNFQSGTEAENWGINVKSINDSCQRNNILMINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNHRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKAVHRGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIAIGETASIRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSVCPIRLAPK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151937g00005 419 CDD DSP_laforin-like 123 264 IPR045204 GO:0019203
Stsc151937g00005 419 SUPERFAMILY E set domains 283 365 IPR014756 -
Stsc151937g00005 419 CDD E_set_AMPKbeta_like_N 286 365 - -
Stsc151937g00005 419 Pfam Dual specificity phosphatase, catalytic domain 128 249 IPR000340 GO:0008138|GO:0016311
Stsc151937g00005 419 Gene3D Protein tyrosine phosphatase superfamily 122 377 IPR029021 -
Stsc151937g00005 419 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 122 417 - -
Stsc151937g00005 419 Pfam Glycogen recognition site of AMP-activated protein kinase 286 367 IPR032640 -
Stsc151937g00005 419 Gene3D Immunoglobulins 273 369 IPR013783 -
Stsc151937g00005 419 ProSiteProfiles Dual specificity protein phosphatase domain profile. 119 281 IPR020422 GO:0006470|GO:0008138
Stsc151937g00005 419 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 273 369 - -
Stsc151937g00005 419 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 112 252 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151937g00005 Stsc-Chr151937 16337 23336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151937g00005 123 419 Protein tyrosine phosphatase (PTP) family AT3G01510 76.431 4.26e-175 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151937g00005 - - gmx:100814503 595.504