Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151937g00004 ATGCTCCTACTCCGATTGACCACCAATCCTCATCCTCCACCGCCATTTCTAGCCTGCACCACCAACGCCGCATCCTCTTCTTCCTTTTTCCCCACACCTCGCTCCGACAAGAACTGCTTCGTTCGCCCGAATGTGAGGACCCACACTCTTCGCGTTTTCGCAATGGCTGATAACAAGGCATTCAAGATGAACCTGAATGAGTACCTTGTCACTCTCGAAAGGCCCCTCGGCATCCGTTTCGCTCTCACCTCTGATGGCAAGATCATCGTCCATTCCCTCACCAAAGGGGGCAATGCAGAGAGGTCGAGGATAATAATGGTAGGTGACACTTTGAAGAAAGCTGGGGATTCATCTCACAACACGCTCGTTGAGATTAAAGACGTTGGTGACACACAGAAGGTGCTAAAGGAGCAAATACGTTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCAATTCAACTACTGCATAAAATGAATGATCTTGAAATTTTGTTTAATAGAGGTCGAGTTCCTGTTACCACCTGGAACAAGACACTATTGGCATCTAATTTACAGCCATCTAATGAGAGCTCTGGGAATTCTGGATTTGTGGTGTTCAATTCAAAATATCTTACGTCGAAAGGAAGCCAACTATTGGGCAATAAAAGTCAACATGCCATCACTTACGGTGAAAGAAATTTCCTTACTCAACACACAACGCAACTTGCTTGTGTTTTTACTGAAGAAGCCTGTGGAGATGGAGAATGGGCTCATGGAAGTTTCCCACTTGAGGAATATATTCAGGCTCTGGACCGTTCGAAGGATGAAATGTACTATAATCATTCCCTTGGCATGCGCTATAGTAAGATTACAGAGCAAATTTATGTGGGATCATGTATTCAAACAGAAGATGATGTGGAAACTTTATCAAATGTTGAGGGAATTACTGCTGTTCTGAACTTTCAAAGTGGAACTGAAGCTGAAAATTGGGGTATAAATGTAAAATCAATCAATGATTCATGTCAAAGGAACAATATTCTCATGATCAACTATCCCATAAGGGATGGAGATTCATATGATATGAGAAAGAAACTTCCATTTTGTGTGGGGCTACTATTACGGCTGCTTAGGAAGAATCATCGTGTCTTTGTTACTTGCACTTCTGGATTCGATCGGTCTCCTGCTTGTGTGATTGCATACCTGCACTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGCAGACCTGACAGGCCAGCAATTGCATGGGCAACGTGGGATCTTATAGCTATGGTTGAAAGGGGAAAACATGATGGACCTCCCACACATGCCGTCACATTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTGGTGGGAGACTTCACTGGAAACTGGAAAGAACCACTAAAGGCAGTGCACCGGGGTGGATCGAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAATACTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGATAGGGGTAATGTTAACAATATAATTGCCATCGGCGAAACTGCCAGCATTCGGCCTTCAGTTCAGCACCAGCAGAAGGATGCAAATGTTGTGAAGGTAATTGAAAGACCTTTGAATGAAAAGGAGCGGTTTATGCTTGCGAAAGCAGCTCGTTGTATCGCATTCTCTGTCTGTCCTATCAGATTAGCTCCCAAGTAA 1749 0.4403 MLLLRLTTNPHPPPPFLACTTNAASSSSFFPTPRSDKNCFVRPNVRTHTLRVFAMADNKAFKMNLNEYLVTLERPLGIRFALTSDGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSHNTLVEIKDVGDTQKVLKEQIRSFSLVLERPTSPFPIQLLHKMNDLEILFNRGRVPVTTWNKTLLASNLQPSNESSGNSGFVVFNSKYLTSKGSQLLGNKSQHAITYGERNFLTQHTTQLACVFTEEACGDGEWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSNVEGITAVLNFQSGTEAENWGINVKSINDSCQRNNILMINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNHRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKAVHRGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIAIGETASIRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSVCPIRLAPK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151937g00004 582 ProSiteProfiles Dual specificity protein phosphatase domain profile. 282 444 IPR020422 GO:0006470|GO:0008138
Stsc151937g00004 582 SUPERFAMILY E set domains 446 528 IPR014756 -
Stsc151937g00004 582 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 275 442 - -
Stsc151937g00004 582 Gene3D Protein tyrosine phosphatase superfamily 275 540 IPR029021 -
Stsc151937g00004 582 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 272 415 IPR029021 -
Stsc151937g00004 582 Gene3D Immunoglobulins 436 532 IPR013783 -
Stsc151937g00004 582 Pfam Dual specificity phosphatase, catalytic domain 291 412 IPR000340 GO:0008138|GO:0016311
Stsc151937g00004 582 CDD E_set_AMPKbeta_like_N 449 528 - -
Stsc151937g00004 582 Pfam Glycogen recognition site of AMP-activated protein kinase 449 530 IPR032640 -
Stsc151937g00004 582 CDD DSP_laforin-like 281 427 IPR045204 GO:0019203
Stsc151937g00004 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 52 580 - -
Stsc151937g00004 582 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 436 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151937g00004 Stsc-Chr151937 16311 23336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151937g00004 134 582 Protein tyrosine phosphatase (PTP) family AT3G01510 69.488 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151937g00004 - - gmx:100814503 1031.55