Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151913g00003 ATGGTTGAGGCGAAGGCTATTGTTCCTGAATCCGTTCTCAAGAAGCAAAAGAGGGAGGAGGAATGGGCCTTGAAGAAAAAGGAGGAGCAAGATGCTGCTAAGAAGAAGAGAGCTGAGAGTCGCAAGCTCATCTATGGCAGGGCTAAACAATATGCTAAAGAATACCAGGAGCAGGAAAAGCAGCTGATTGAATTGAAGCGGGAAGCCAAGCTGAAAGGTGGCTTCTATGTGGATCCAGAGGCTAAGCTTCTGTTCATTGTCCGCATCCGTGGTATCAATGCCATGGACCCAAAGTCAAGGAAGATCTTGCAGCTGTTGAGGTTGCGACAGATTTTTAATGGCGTGTTTCTGAAGGTCAACAAGGCCACAGTGAACATGCTTCACAGGGTTGAGCCCTACGTAACTTATGGTTACCCGAATCTCAAGAGTGTGAGAGAGCTCATCTATAAGAGGGGCTTTGGAAAATTAAATAAGCAGAGAGTTGCCCTCACGGACAACTCAATCATTGAGCAGGCACTTGGGGAACATGGGATCATATGCATTGAGGATCTTATCCATGAGATCATAACTGTTGGGCCCCACTTTAAGGAAGCGAACAACTTCCTTTGGCCATTTAAGCTTAAGGCGCCTTTGGGGGGCTTAAAGAAGAAGAGAAACCACTACGTGGAAGGTGGTGACGCAGGAAACCGCGAAAACTACATCAACGAGCTCATCAGAAGAATGAATTAG 729 0.4664 MVEAKAIVPESVLKKQKREEEWALKKKEEQDAAKKKRAESRKLIYGRAKQYAKEYQEQEKQLIELKREAKLKGGFYVDPEAKLLFIVRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGFGKLNKQRVALTDNSIIEQALGEHGIICIEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151913g00003 242 FunFam 60S ribosomal protein L7 188 242 - -
Stsc151913g00003 242 NCBIfam 60S ribosomal protein uL30 9 242 IPR005998 GO:0000463|GO:0003735|GO:0022625
Stsc151913g00003 242 Pfam Ribosomal protein L30p/L7e 84 134 IPR016082 -
Stsc151913g00003 242 CDD Ribosomal_L7_archeal_euk 83 242 IPR035808 -
Stsc151913g00003 242 SUPERFAMILY Ribosomal protein L30p/L7e 83 242 IPR036919 -
Stsc151913g00003 242 Coils Coil 48 72 - -
Stsc151913g00003 242 FunFam 60S ribosomal protein L7 83 187 - -
Stsc151913g00003 242 ProSitePatterns Ribosomal protein L30 signature. 102 134 IPR018038 -
Stsc151913g00003 242 PANTHER 60S RIBOSOMAL PROTEIN L7 6 242 IPR039699 -
Stsc151913g00003 242 Pfam Ribosomal L30 N-terminal domain 8 79 IPR012988 -
Stsc151913g00003 242 Gene3D - 188 242 IPR036919 -
Stsc151913g00003 242 Gene3D - 83 187 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151913g00003 Stsc-Chr151913 12291 14627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151913g00003 2 242 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.232 1.57e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151913g00003 K02937 - gmx:100813342 410.609