Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151908g00001 ATGATGATGATGCTGCCGTGCGACTACTGCGACTCCAAAACGGCGGTACTCTTTTGCCGAGCCGACTCGGCCAAGCTATGCCTATCATGTGACCAGCACGTGCACTCCGCCAACGCTCTCTCACTCAAGCATGTCCGCTCTCAGATTTGCGATAACTGCCGCAACGAACCCGCCGCCGTGCGATGCGCCACCGACAATCTCGTCCTCTGCAGCGACTGCGACTCCGACGCACACAACGGTTCCTCCGTCGCATCCTCTCACCACGCCCGCCACCGCCTCCAGGGCTTCTCTGGCTGTCCCCCCGCCCTCGAGATCGCCGCCGCCCTAGGGATCGAGCTTAAATTCAACTCCAGCTGCAACGGCGGCTCCGGTAACGAAACTGGATTCGACGAGATTAAAGGTCCGGTGGTGCCGATCGTGAAGGACAAGGTGTATGAGCAGGTGCTGGAGATGGCGAGGAGGAACGGCGTGGCGGCGGATCGAGACGAAGGAGTTGAAGCTGGATTGTGCCCTGATACGCCGCCGTGCGTTCACGGTGCTGACGAGAAAGGTGAATTGAATAATAATTGTAACAGCTTTAGTAACAATAAGAGGAGTGCGAATCGTAACAATAATAACAATAACAAGAACAACGAGGATGAGTTGTTGATGGAGCAAACGCCGTTCACTTCTTTGTTGATGCTGCCTTCTGATGGCGGAAGCGTGAAGAGAAATGATTGCGACAGCGAAGGGGATCTTCTCTGGAATAATTGCAATCCAGCGTCTGAACAGCCTTATGCTCTTTGTAAAACTTTAGATGTGGTCTGCAAATCTTTGAAAGTATACTCTTCCATTGCAATTTGCACATGGCTTGTATGGGATTTTCAATTACAGAAATCAAGAGATTTACGTGAAGCGGGAATGATGTCATTTGATAATCTGGATGAAGCTTCATTAGTAATTCCAAAAACATTGCAAGATGTGAACAATACGAATTCCTCAACAATTGATGATATTCTATCAAGAAATAATCAATCGGATCAATCGTCCTCAAACCATGTGATGAAGAACGAAGAAAGTAACAAGAAAGCTAGAGGTGGATTATCATCAGAGTCCAAATTGGTTGAACCCATAACATACAATAACACCAACAATACCACATACATGGAGCATCTTGTGAGTGGGAGTGACAATGTTAGCACCATAAAAGACAAGGTTAGCTTTGAAGAACTGACTAAAAACAGAGGGGATGCCATGTTACGCTACAAGGAAAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGGTATGAATCGAGAAAAGCTAGGGCTGATACGAGAAAAAGGGTGAAAGGACGATTTGTGAAGGCAAGTGATGCAACTGCTTCTCTAAACGAAGAATAA 1383 0.4736 MMMMLPCDYCDSKTAVLFCRADSAKLCLSCDQHVHSANALSLKHVRSQICDNCRNEPAAVRCATDNLVLCSDCDSDAHNGSSVASSHHARHRLQGFSGCPPALEIAAALGIELKFNSSCNGGSGNETGFDEIKGPVVPIVKDKVYEQVLEMARRNGVAADRDEGVEAGLCPDTPPCVHGADEKGELNNNCNSFSNNKRSANRNNNNNNKNNEDELLMEQTPFTSLLMLPSDGGSVKRNDCDSEGDLLWNNCNPASEQPYALCKTLDVVCKSLKVYSSIAICTWLVWDFQLQKSRDLREAGMMSFDNLDEASLVIPKTLQDVNNTNSSTIDDILSRNNQSDQSSSNHVMKNEESNKKARGGLSSESKLVEPITYNNTNNTTYMEHLVSGSDNVSTIKDKVSFEELTKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDATASLNEE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151908g00001 460 ProSiteProfiles Zinc finger B-box type profile. 45 93 IPR000315 GO:0008270
Stsc151908g00001 460 ProSiteProfiles Zinc finger B-box type profile. 2 49 IPR000315 GO:0008270
Stsc151908g00001 460 Pfam CCT motif 408 450 IPR010402 GO:0005515
Stsc151908g00001 460 SMART bboxneu5 50 86 IPR000315 GO:0008270
Stsc151908g00001 460 SMART bboxneu5 2 49 IPR000315 GO:0008270
Stsc151908g00001 460 ProSiteProfiles CCT domain profile. 408 450 IPR010402 GO:0005515
Stsc151908g00001 460 MobiDBLite consensus disorder prediction 325 369 - -
Stsc151908g00001 460 Pfam B-box zinc finger 47 87 IPR000315 GO:0008270
Stsc151908g00001 460 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 453 - -
Stsc151908g00001 460 CDD Bbox1_BBX-like 6 49 - -
Stsc151908g00001 460 MobiDBLite consensus disorder prediction 325 348 - -
Stsc151908g00001 460 MobiDBLite consensus disorder prediction 188 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151908g00001 Stsc-Chr151908 1289 6343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151908g00001 4 452 C2C2-CO-like Transcription Factor Family AT2G33500 35.124 2.71e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc151908g00001 CCT 2.9e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151908g00001 - - ahf:112697135 716.072