Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151907g00003 ATGGCAAATGGAAACTTGGATGAACATCTCTCAGGGAAGAAAAGCAATGCGAAGTTCTTAACTTGGGAAGATAGACTTCGGATCGCCGTGGATGCAGCCCAAGGACTGGAATATCTGCATAATGGTTGTAAGCCGTTAATAATTCACAGATATGTGAAATGTGCAAATATTTTGTTAACTGGAAACTTCCAAGCCAAATTGGCTGATTTTGGCCTATCCAGAAGCTTTATAGCTGACGGTGACACGCATATCTCCACTGCCTTTGTTGCCGGAACTCTTGGTTACCTAGATCCTCAGTGTACCATGTTAAACAGGTTCACAGAGAAAGGTGATGTTTACAGCTTCGGGGTAGTTCTTTTGAAGATAATCACGGGTCTACCGGCGATATCAAAAACCGAGGATAAAGTTCACATAAGTCACCATGTTGATTCCTTTCTTTCTAAAGGGGATATAGAAGGTATTGTTGACTCAAAATTACAAGGAGATTTTGACAGTCGCTCTGTTTGGAAAGCTGTTGAAATAGCAATGGCTTCTGTGTCCTATAGCCCTAACAAAAGGCCATACATGAGTGATGTATTGGTTGTGCTAAAGGAATGTTTGGCATTAGAGTTAGCTCGGAAAGAATCCAACATTGACACAGAAAACAATGATTTAATTGAGTTCACCCATAATCTGACTTCTGAAACTGGCCCTTTAGTAAGGTAG 705 0.4085 MANGNLDEHLSGKKSNAKFLTWEDRLRIAVDAAQGLEYLHNGCKPLIIHRYVKCANILLTGNFQAKLADFGLSRSFIADGDTHISTAFVAGTLGYLDPQCTMLNRFTEKGDVYSFGVVLLKIITGLPAISKTEDKVHISHHVDSFLSKGDIEGIVDSKLQGDFDSRSVWKAVEIAMASVSYSPNKRPYMSDVLVVLKECLALELARKESNIDTENNDLIEFTHNLTSETGPLVR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151907g00003 234 ProSiteProfiles Protein kinase domain profile. 1 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151907g00003 234 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1 209 - -
Stsc151907g00003 234 SUPERFAMILY Protein kinase-like (PK-like) 1 196 IPR011009 -
Stsc151907g00003 234 Gene3D Transferase(Phosphotransferase) domain 1 1 224 - -
Stsc151907g00003 234 Pfam Protein tyrosine and serine/threonine kinase 1 132 IPR001245 GO:0004672|GO:0006468
Stsc151907g00003 234 Coils Coil 197 217 - -
Stsc151907g00003 234 PANTHER OS07G0107800 PROTEIN-RELATED 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151907g00003 Stsc-Chr151907 10560 11550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151907g00003 1 234 Receptor kinase-like Gene Family AT1G51800 55.508 2.53e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc151907g00003 PK_Tyr_Ser-Thr 2.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151907g00003 - - gmx:100794504 305.449