Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151901g00004 ATGGCAAAAGATATAGAAACTATTCCTCCGGTAGAGAGTGCAGTGGGTCACGCTCACAAGGACTACCATGACCCTCCACCCGCTCCACTCTTCGACTCCGACGAGCTCCATAAGTGGTCCTTCTACAGGGCTCTCATTGCCGAGTTCGTTGCCACCCTCCTCTTCCTCTACATAACTGTCTTAACCGTCATCGGCTACAAAAGCCAAAGCGACCCTGCCAACAATGGCGGCGACGCCTGCGCCGGCGTTGGCATCCTCGGTATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTCTATTGCACTGCCGGCATCTCCGGGGGACACATAAACCCGGCGGTGACGTTTGGGCTGTTCCTTGCAAGAAAGGTGTCGCTGGTGAGAGCAGTGCTGTACATGGTGGCGCAGTGTTTGGGAGCCATATGCGGAGTAGGGCTGGTCAAGGGTTTCCAGAGCAGCTACTACGACAGGTACGGCGGTGGAGCTAACATGCTCTCTGACGGTTACAGCAAAGGAACTGGCTTGGGTGCTGAGATCATTGGCACCTTCGTTCTTGTCTATACCGTCTTCTCTGCCACCGATCCCAAGCGTAATGCCAGAGACTCCCACGTCCCCGTGTTGGCACCGCTTCCCATTGGGTTTGCGGTGTTTATGGTTCACTTGGCCACCATCCCCGTCACCGGCACTGGCATCAACCCTGCTAGAAGCTTAGGAGCTGCTGTTATATACAACAATCACAAAGCTTGGGATGACCAGTGGATTTTTTGGGTGGGGCCCTTCATCGGAGCTGCCATTGCTGCTTTGTACCACCAGTTCGTGTTGCGAGCACAGGCCGCCAAGGCTCTAGGTTCATTCAGGAGCTCCTCCAACCTCTGA 879 0.554 MAKDIETIPPVESAVGHAHKDYHDPPPAPLFDSDELHKWSFYRALIAEFVATLLFLYITVLTVIGYKSQSDPANNGGDACAGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGVGLVKGFQSSYYDRYGGGANMLSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNNHKAWDDQWIFWVGPFIGAAIAALYHQFVLRAQAAKALGSFRSSSNL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151901g00004 292 Gene3D Glycerol uptake facilitator protein. 28 292 IPR023271 -
Stsc151901g00004 292 ProSitePatterns MIP family signature. 110 118 IPR022357 -
Stsc151901g00004 292 CDD MIP 43 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 FunFam Probable aquaporin PIP1-2 28 290 - -
Stsc151901g00004 292 SUPERFAMILY Aquaporin-like 35 276 IPR023271 -
Stsc151901g00004 292 Pfam Major intrinsic protein 35 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 NCBIfam MIP family channel protein 47 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 PRINTS Major intrinsic protein family signature 178 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 PRINTS Major intrinsic protein family signature 254 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 PRINTS Major intrinsic protein family signature 214 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151901g00004 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 16 286 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151901g00004 Stsc-Chr151901 18325 19653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151901g00004 3 292 Major Intrinsic Protein MIP AT2G37170 83.103 4.14e-177 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151901g00004 K09872 - cit:102608729 504.597