Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151896g00002 ATGAGTTTTGGAGGGTTTCTAGACAGCAACTCCGGTGGTGGCGACGACGGCAGCGGCGGCTGTGTGAGAAACATAGTAGAAATTCCATATAGCAACGGTGGTGGTGGTGGTGGCACTACCAACAACAACGATAACAACAACAACAATAATAATCACAATAATAGAACAATGCCCTCTGGTGCAATCTCACAGCCTCGGCTTTTGACTACTCAAACTTTGGCCAAATCAATGTTCAACTCACCTGGCCTCTCTCTAGCACTTCAGCAAACGAATAATCTTGATGGACAAGGGGATGTGATGAATAGCAACAACATTATTATGGGTGAGAACAACAACAACAATAATAATAATGGAGGATTGAGAAGGAGCAGAGAAGAAGAACATGAAAGCAGATCTGGAAGTGATAACATGATGGATGGTGCCTCAGGCGATGAACAAGATGCTGATGCTGCCGACAACATAAATCCAACCAAAAGGAAGAAAAGATATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAATCGTTGTTTAAGGAGTGTCCTCACCCTGACGAGAAACAAAGGCTAGAACTTAGTAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGAACCCAAATGAAGACTCAATTGGAGCGCCATGAGAACACACTCCTAAGGCAAGAGAATGACAAGCTTAGAGCTGAGAACATGTCAATTAGAGATGCAATGAGGAATCCCATGTGTTCAAATTGTGGTGGTCCAGCCATAATTGGTGAGCTTTCACTTGAGGAGCAACACCTTAGAATTGAGAATGCAAGGCTAAAGGATGAGTTAGACCGGGTTTGCGCCCTCGCCGGCAAGTTCTTGGGCCGGCCCATTTCGTCGTTGGGCGGGCCCACTCCGTTGCCAAATTCAAGTTTGGAACTTGGTGTTGGCACCAATAACAACAATGGCTATGGTTGCAATTTGAGCATAAATGTGCCTAATAATAGCCTGCCTTTGGGGGCTGATTTTGGTGTGAATTTGTCTAGTCCTTTGGGTATGGTTTCGATGACTCGGCCGCAGCCGAGCGCGGTGGTTAGCGGATTGGATAGGTCAATTGAGAGGTCAATGTTGTTGGAGCTTGGTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCACAAAGTTGTGAGCCTCTTTGGATAAGGAGTATGGAAATGGGGGGAAGGGAAGTGCTTAACCATGAGGAGTATATTAGGACATTCCCTAATCCTTGCATTGCTTTGAGGCCTAATGCCTTTGTCTCTGAGGCTTCAAGGGAAACTGGCCTTGTCATCATAAATAGCTTGGCCCTTGTTGAGACTTTAATGGATGCGAATCGATGGGCAGAGATGTTTCCTTGTATGATTGCAAGAACCTCAACCACAGAAGTGATATCAAATGGAATAAACGGCAGCAGAAATGGAGCACTTCAACTAATGCATGCGGAGCTTCAAGTTCTATCACCATTGGTGCCAGTGAGAGAGGTGAATTTCCTTAGATTTTGCAAGCAACATGCAGAAGGGGTGTGGGCAGTGGTGGATGTCTCCATTGATGCAATCAGAGAAACTTCTTCTGGCGGTGTTAATTGCAGAAGACTCCCTTCTGGCTGCATTGTACAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCAGAATACGAGGAAAGGGAAGTTCATCAGTTATACAGAGCCTTGCTGAGCTCCGGCATGGCCTTCGGCGCCCAGCGGTGGATCGCCACCCTACAGCGCCAGTGCGAGTGCCTCGCCATCCTCATGTCTTCTACTCAACCTTCCCGAGACCATTCAGCAATAACTGCAAGTGGTAGGCGCAGCATGCTAAAGCTGGCACAGAGGATGACCAACAACTTCTGCGCCGGAGTGTGCGCCTCCACCGTGCACAAGTGGAACAAGCTCAACAACGCTGGCAACACCGTCGACGAGGATGTCAGGGTCATGACAAGGAAGAGTGTGGACGACCCCGGGGAGCCACCTGGGATCGTCCTCAGCGCCGCCACTTCGGTGTGGCTCCCAGTCTCGCCGCAGAGGCTGTTCGACTTCCTCCGCGACGAGAGGCTGAGGAGCGAGTGGGACATACTATCCAATGGTGGGCCCATGCAAGAGATGGCCCACATTGCAAAGGGACAAGATCATGGAAACTGCGTCTCGCTCCTTAGAGCCAGTGCGATAAATTCAAATCAAAGTAGCATGTTGATACTACAAGAGACATGCATAGATCCTGCGGGCTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCAATGCACGTGGTAATGAACGGTGGTGATTCTGCCTACGTGGCATTATTGCCTTCTGGGTTTGCAATTGTTCCTGATGGGCCTGGGCCTCGTGGGGCCCAAAATGGGGGCGCCGATGTTAATGGTGGCGATGACCTTGGTGGTGGGGCGCGCGTGGGTGGGTCCCTTTTAACGGTGGCATTTCAGATTCTTGTGAACAGTCTCCCTACGGCGAAGCTCACGGTAGAATCGGTGGAAACCGTGAACAACCTCATTTCATGCACAGTTCAAAAGATAAAAGCAGCACTTCGATGTGAAAGTTGA 2616 0.4912 MSFGGFLDSNSGGGDDGSGGCVRNIVEIPYSNGGGGGGTTNNNDNNNNNNNHNNRTMPSGAISQPRLLTTQTLAKSMFNSPGLSLALQQTNNLDGQGDVMNSNNIIMGENNNNNNNNGGLRRSREEEHESRSGSDNMMDGASGDEQDADAADNINPTKRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGELSLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLGGPTPLPNSSLELGVGTNNNNGYGCNLSINVPNNSLPLGADFGVNLSSPLGMVSMTRPQPSAVVSGLDRSIERSMLLELGLAAMDELVKMAQSCEPLWIRSMEMGGREVLNHEEYIRTFPNPCIALRPNAFVSEASRETGLVIINSLALVETLMDANRWAEMFPCMIARTSTTEVISNGINGSRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDAIRETSSGGVNCRRLPSGCIVQDMPNGYSKVTWVEHAEYEEREVHQLYRALLSSGMAFGAQRWIATLQRQCECLAILMSSTQPSRDHSAITASGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNNAGNTVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDPAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGPRGAQNGGADVNGGDDLGGGARVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALRCES 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151896g00002 871 Coils Coil 258 278 - -
Stsc151896g00002 871 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 158 867 IPR042160 -
Stsc151896g00002 871 MobiDBLite consensus disorder prediction 1 20 - -
Stsc151896g00002 871 MobiDBLite consensus disorder prediction 34 61 - -
Stsc151896g00002 871 CDD homeodomain 159 217 IPR001356 GO:0003677
Stsc151896g00002 871 ProSitePatterns 'Homeobox' domain signature. 192 215 IPR017970 GO:0000981|GO:0006355
Stsc151896g00002 871 MobiDBLite consensus disorder prediction 94 167 - -
Stsc151896g00002 871 SUPERFAMILY Bet v1-like 368 599 - -
Stsc151896g00002 871 SMART START_1 375 599 IPR002913 GO:0008289
Stsc151896g00002 871 MobiDBLite consensus disorder prediction 120 134 - -
Stsc151896g00002 871 MobiDBLite consensus disorder prediction 32 61 - -
Stsc151896g00002 871 ProSiteProfiles 'Homeobox' domain profile. 157 217 IPR001356 GO:0003677
Stsc151896g00002 871 FunFam Homeobox-leucine zipper protein HDG1 143 233 - -
Stsc151896g00002 871 SUPERFAMILY Homeodomain-like 149 217 IPR009057 -
Stsc151896g00002 871 Pfam Homeodomain 160 215 IPR001356 GO:0003677
Stsc151896g00002 871 Gene3D - 146 233 - -
Stsc151896g00002 871 Pfam START domain 378 599 IPR002913 GO:0008289
Stsc151896g00002 871 SMART HOX_1 158 221 IPR001356 GO:0003677
Stsc151896g00002 871 CDD START_ArGLABRA2_like 370 598 - -
Stsc151896g00002 871 SUPERFAMILY Bet v1-like 627 864 - -
Stsc151896g00002 871 Coils Coil 211 243 - -
Stsc151896g00002 871 ProSiteProfiles START domain profile. 366 602 IPR002913 GO:0008289
Stsc151896g00002 871 FunFam Homeobox-leucine zipper protein GLABRA 2 375 598 - -
Stsc151896g00002 871 Gene3D - 436 598 IPR023393 -
Stsc151896g00002 871 MobiDBLite consensus disorder prediction 94 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151896g00002 Stsc-Chr151896 15837 23577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151896g00002 1 871 Homeobox Transcription Factor Family AT3G61150 62.772 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc151896g00002 START 7.6e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151896g00002 K09338 - tcc:18614208 1241.48