Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151891g00002 ATGATGGGAGATAGTATTGGTAGTAGTAGGGCCATGAATAATAAGTACAAGGTTGATGAGGTTGAAGAAGACGACGAAGATGAAGAATTCCAAGAGGAAGATTTGGGAGGGATGATGAGTAGCAGCGACAATGAAGCAAGAAAGAATAAGAGAGTAGTGGCAGCTGTGTACACAACTACTACTCAGAACAGCAAGAGAGTCTCCAGAGGTAGCAGTGGAGGCTCATCAATGGCAGCATCTTGTCAAGTTGATAGTTGCAATGCAGATCTAAGCATTGCAAAGCAGTATCACAAACGCCATAAGGTTTGTGAGTACCATGCCAAGGCTCACTCTGTACTCATCTCTCACCAACAACAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTATCAGAATTTGATGAGTCAAAAAGGAGTTGTAGAAAGCGTTTAGCCGGACACAATGAGAGGCGTCGCAAAAATTCATCTGATTACCAGCAAGGATAG 489 0.4356 MMGDSIGSSRAMNNKYKVDEVEEDDEDEEFQEEDLGGMMSSSDNEARKNKRVVAAVYTTTTQNSKRVSRGSSGGSSMAASCQVDSCNADLSIAKQYHKRHKVCEYHAKAHSVLISHQQQRFCQQCSRFHELSEFDESKRSCRKRLAGHNERRRKNSSDYQQG 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151891g00002 162 ProSiteProfiles Zinc finger SBP-type profile. 78 155 IPR004333 GO:0003677
Stsc151891g00002 162 MobiDBLite consensus disorder prediction 1 48 - -
Stsc151891g00002 162 Gene3D - 71 142 IPR036893 GO:0003677|GO:0005634
Stsc151891g00002 162 MobiDBLite consensus disorder prediction 20 34 - -
Stsc151891g00002 162 FunFam Squamosa promoter-binding-like protein 14 72 142 - -
Stsc151891g00002 162 SUPERFAMILY SBT domain 80 159 IPR036893 GO:0003677|GO:0005634
Stsc151891g00002 162 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 156 IPR044817 GO:0003677
Stsc151891g00002 162 Pfam SBP domain 81 154 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151891g00002 Stsc-Chr151891 10734 11789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151891g00002 74 158 SBP-box Gene Family AT2G33810 71.765 9.62e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc151891g00002 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151891g00002 - - vra:106775516 153.68