Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151891g00001 ATGTTGGGTAGCTTCAATAACATGCCACTCACCCACCAATGCCCACAACAACAGGTTGTTTCATCATCAACAATGGAGAAAGCAGAGCAGCAAGGAGGAGGAGCATTAAAGTGTCCACGATGTGAGTCATCAAACACAAAGTTCTGTTACTACAACAATTACAGCCTGTCACAGCCAAGGCACTTCTGCAAAGCCTGCAAGAGATACTGGACAAGAGGTGGAACCCTCCGGAATGTTCCTGTTGGTGGCGGTTGCAGAAAGAACAAGCGTCTCAAGAGATCCACTTCTTCGAATCACATCAACAACAACACCAATACCAATTTGTTATATGGATCAACAACTGCTAATTCATCAACATCATGTTCTGATGTGAATAATCTGCCGTTATTCCACAACAGTTCTGATGCTGCTGCAGGTCTTCATCATCATCATGTTCATAATAATAATAACTATGGGTTTGGTGCTTCTTCTTCTCCAATAAGCTATGATTCTATCTTCGGTAGTTGTAGTAACTTATTGTTACCTGCTGCTTGCACAACTATGATGCCTTTGATGAGATCTACTACGAATCTGATGAATAATGGTGATGACAATGCAAACAACAACAACAATACTTTTCAGGGATTGTTAGAGGAGCATCATGATGATCATAGTGGTGCTTTGAAGGACGTGAAAGTAGATAATAATAATAATAATAATGGTGATGGTGGTGGGAGTGGTTATTATTGCGAAAACCAGGAGATAATGGAGAATCATCATCAAGTGGCTACTAGTTTGTGTGATCCCAATTCACTTTATAACTGGAATAATAATAATGGTTTCAGTTCTTGGAACAACAACGATAATAATCATCAACATCTTGCTTCTCTCATCTAG 876 0.3961 MLGSFNNMPLTHQCPQQQVVSSSTMEKAEQQGGGALKCPRCESSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSTSSNHINNNTNTNLLYGSTTANSSTSCSDVNNLPLFHNSSDAAAGLHHHHVHNNNNYGFGASSSPISYDSIFGSCSNLLLPAACTTMMPLMRSTTNLMNNGDDNANNNNNTFQGLLEEHHDDHSGALKDVKVDNNNNNNGDGGGSGYYCENQEIMENHHQVATSLCDPNSLYNWNNNNGFSSWNNNDNNHQHLASLI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151891g00001 291 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Stsc151891g00001 291 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 250 IPR045174 GO:0003700|GO:0006355
Stsc151891g00001 291 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Stsc151891g00001 291 Pfam Dof domain, zinc finger 36 90 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151891g00001 Stsc-Chr151891 3104 4893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151891g00001 1 93 C2C2-Dof Transcription Factor Family AT1G28310 65.625 8.32e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc151891g00001 zf-Dof 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151891g00001 - - adu:107468324 160.614