Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151887g00002 ATGGCTGTTTCACTATGGAGAGCTCGCTTAGCTTCCTCTCTTCTCTCCAATCTCACCCACCCTCTTCGCCGTTTCTCTTCCGATGTTATTGCAGACACAAACGCTCATAATGCTCGAGAGAGCATGATGAATCAGATGATGTATTCCGATATAAATTCTCAAATTGGGAGTTGTATGCCATTATCCTCTATGCGAATCGGAACTATCATTCACAACATTGAGTTGAACCCAGGGCAAGGTGGCAAGCTGGTTAGAGCAGCTGGAACTTGTGCGAAAATCCTGAAGGAACCCACATCAAAGTACTGTCTTATCCAGCTCCCCTCGGGTGTTAAAAAAATGATTGATTCTCGTTGCAGGGCCACCGTTGGTACTGTCTCAAATCCAAGCCACGGAGATAAGAAGCTTAGGAAGGCTGGTCATAGCAGATGGCNNNNNNNNNNGGCCATGAATCCAGTAGACCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGTCGGTGGGGAAAAGGATCTCGTACTCCTTGGGGCAAGCCGACTAAGAGTGGATTCAAGACTGGACCCCTAAAGCGTAGGAAGTAG 585 0.4718 MAVSLWRARLASSLLSNLTHPLRRFSSDVIADTNAHNARESMMNQMMYSDINSQIGSCMPLSSMRIGTIIHNIELNPGQGGKLVRAAGTCAKILKEPTSKYCLIQLPSGVKKMIDSRCRATVGTVSNPSHGDKKLRKAGHSRWXXXXAMNPVDHPHGGGEGKSKSSGRWGKGSRTPWGKPTKSGFKTGPLKRRK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151887g00002 194 SUPERFAMILY Translation proteins SH3-like domain 56 183 IPR008991 -
Stsc151887g00002 194 Gene3D - 44 125 IPR014722 -
Stsc151887g00002 194 Pfam Ribosomal Proteins L2, C-terminal domain 54 178 IPR022669 GO:0003735|GO:0005840|GO:0006412
Stsc151887g00002 194 Gene3D Ribosomal protein L2, domain 3 126 194 IPR014726 -
Stsc151887g00002 194 SMART Ribosomal_L2_C_2 53 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Stsc151887g00002 194 PANTHER RIBOSOMAL PROTEIN L2 47 192 IPR002171 GO:0003735|GO:0005840|GO:0006412
Stsc151887g00002 194 FunFam 60S ribosomal protein L2, mitochondrial 49 125 - -
Stsc151887g00002 194 MobiDBLite consensus disorder prediction 125 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151887g00002 Stsc-Chr151887 7158 9353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151887g00002 18 159 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 35.032 2.33e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151887g00002 - - gmx:100792418 272.322