Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151882g00004 ATGAGGGATACTGAGAAAAATTTGAATAAGAGAGGCTTTAGAAAATCTAGTCACTCAAGGGAACATACTGATTCAAAGCTTGATTCGTCACCAAGATTCAAAACAAGTAGCACAAAAGGCCAAGGGAAGAAGCAGAAATTGAAATCAAAACCTCACAAACTCTGTGTTTGCGCAAACACATCTAGGGGGACAGTTACAAATTCTTCTTCTATCAAGGGGTCAATCAAAGATGCTTCAAGTGAAAAAATGATTGTTGGAGGGGAGAAAATTTCTTTTAGTTCTATGGTCGAGGGGAAAGATGCCGATGGGGAAGTGAATATTCAGAAAGTTAAGAGAAAGAGGAGGAGGAAAAGGCGAAGGGATAATGTGGATCTTGATGATGCTTCGCGCCTGCAGAGGAAAACAAGGTATCTGTTAATCAGAATGAAGGTAGAGCAGAACCTTTTAGATGCATACTCTGGAGAAGGCTGGAAAGGTCAAAGCCGAGAAAAGATTAGACCGGAGAAGGAACTACAAAGAGCAAAGAAACAGATTTTAAAATGCAAGCTTGGTATTCGTGACGTCATTTTCCAGTTGGATACTCTTAGTTCTGTGGGCAGGATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTTCTAAGTGCAAGTTGCCCGAAGCATTCCCCGATAACGATATTATACTCTGTGATGGAACATGCAACCGTGCTTTTCACCAAAGATGTCTCGACCCACCATTGGACACTGAAAATATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGCTTTGTGAATGTAAGATGGAAATACTCGAGGCAACGAATGCTCATCTTGGGACTGACTTCTCCTTGGACAGTACATGGCAGGATGTTTTCAAGGAAGAAGCTGCTTTACCCGATGATGATGCCGCTTTACTAAATCCGGAGGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAACCCGGACAGGAGAGACAACTCTCACAACATCAATGCAGAAGGCACTGATGATAATCCATCTGATTCGAGCAGCTCTACCAGTCTCTGGTCCTTAAACGATGAATATTCTCCTGTAGACAAAGCTTTGAGCCTTGAATATCTTTCTGTTAATAGCTGCATAGATTCTGAAGGATCCGGGGAGATAGTATGTGGCCGCAGGCAGCGTAAAGCAGTTGACTACAGGAAACTTTATGATGAAATGTTTAAGGATGCTTCTCCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCGGGAAAAAGAAAGCGGAGAGAAAAGGAATCTGATGCAGCTAATACACTTATGACGCTGCATGAAAGCGATAATAAATATCCTACTAATGAGAGGGATGATACAATAAGAGAGGGAGAACACATACATATAAAAAGATCTTGCTTCAGAATTCCACATGATGCAGTCGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAACTTCCTCCAAGATCCGTGAAGGAACGCCTTTCAAAAGAGTTGGGAATAGATGCTGCGAAGGTTAGCAAGTGGTTCAAAAATGCTCGTTACATAGCTCTTAAAACCAGGAAGCATCAAGTGGAAGGAGGAGAGCCACCTCCGAGTTTGTGTAAGACCTCAAAGGATTCCGGTTCACAAAATGTGGACAAAGATAAGCTTTTGTGGAAATCAAAGGCCTCTAAAATTACCATGATCCGTACCGGTAGGAAGAAAATGAAGTCATCTGGCAGTCTTCGGAAGAAGAGGCAACAGGAAATATCTCTGGCCAAGACATCAGAAAATTGCAACAAGGAATCGGAAGAAGTCAGTGATGATGTTGGCTTGAAGAAGCTGTTGCAAGAAAGAAAAACAAAGATAGAGATTGTATTTGGAGGAGATTCCAAGGCAGCAGAGTTGGAATTTGAAAGACTCTGCAAATTGAAGGATAAACTAGATAGCATGAAGGTTAAGTTAATCAAATTTCAAAACCAGAGAGCAAAGGATGCAAAGGAACCATGTGTTATATATGTGCCCATAGCTCAATTAAGGGAAAAAGGTTGA 2058 0.4164 MRDTEKNLNKRGFRKSSHSREHTDSKLDSSPRFKTSSTKGQGKKQKLKSKPHKLCVCANTSRGTVTNSSSIKGSIKDASSEKMIVGGEKISFSSMVEGKDADGEVNIQKVKRKRRRKRRRDNVDLDDASRLQRKTRYLLIRMKVEQNLLDAYSGEGWKGQSREKIRPEKELQRAKKQILKCKLGIRDVIFQLDTLSSVGRIEDSVIAPDGSVYHEHIFCSKCKLPEAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKLCECKMEILEATNAHLGTDFSLDSTWQDVFKEEAALPDDDAALLNPEEEWPSDDPEDDDYNPDRRDNSHNINAEGTDDNPSDSSSSTSLWSLNDEYSPVDKALSLEYLSVNSCIDSEGSGEIVCGRRQRKAVDYRKLYDEMFKDASPCEQVSEDEDWGPGKRKRREKESDAANTLMTLHESDNKYPTNERDDTIREGEHIHIKRSCFRIPHDAVEKLRQVFAENELPPRSVKERLSKELGIDAAKVSKWFKNARYIALKTRKHQVEGGEPPPSLCKTSKDSGSQNVDKDKLLWKSKASKITMIRTGRKKMKSSGSLRKKRQQEISLAKTSENCNKESEEVSDDVGLKKLLQERKTKIEIVFGGDSKAAELEFERLCKLKDKLDSMKVKLIKFQNQRAKDAKEPCVIYVPIAQLREKG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151882g00004 685 SUPERFAMILY Homeodomain-like 471 534 IPR009057 -
Stsc151882g00004 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 267 IPR013083 -
Stsc151882g00004 685 MobiDBLite consensus disorder prediction 305 357 - -
Stsc151882g00004 685 CDD homeodomain 471 532 IPR001356 GO:0003677
Stsc151882g00004 685 MobiDBLite consensus disorder prediction 310 328 - -
Stsc151882g00004 685 Pfam PHD-finger 218 273 IPR019787 -
Stsc151882g00004 685 Pfam Homeodomain 479 522 IPR001356 GO:0003677
Stsc151882g00004 685 MobiDBLite consensus disorder prediction 1 29 - -
Stsc151882g00004 685 ProSitePatterns Zinc finger PHD-type signature. 219 270 IPR019786 -
Stsc151882g00004 685 Gene3D - 470 534 - -
Stsc151882g00004 685 FunFam pathogenesis-related homeodomain protein 470 534 - -
Stsc151882g00004 685 MobiDBLite consensus disorder prediction 530 553 - -
Stsc151882g00004 685 CDD PHD_PRHA_like 218 270 IPR045876 -
Stsc151882g00004 685 MobiDBLite consensus disorder prediction 1 53 - -
Stsc151882g00004 685 SMART PHD_3 218 271 IPR001965 -
Stsc151882g00004 685 SMART HOX_1 470 532 IPR001356 GO:0003677
Stsc151882g00004 685 ProSiteProfiles Zinc finger PHD-type profile. 216 273 IPR019787 -
Stsc151882g00004 685 FunFam pathogenesis-related homeodomain protein-like 210 270 - -
Stsc151882g00004 685 ProSiteProfiles 'Homeobox' domain profile. 468 528 IPR001356 GO:0003677
Stsc151882g00004 685 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 14 684 - -
Stsc151882g00004 685 MobiDBLite consensus disorder prediction 341 357 - -
Stsc151882g00004 685 SUPERFAMILY FYVE/PHD zinc finger 210 276 IPR011011 -
Stsc151882g00004 685 MobiDBLite consensus disorder prediction 417 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151882g00004 Stsc-Chr151882 8708 13271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151882g00004 118 554 Homeobox Transcription Factor Family AT4G29940 55.088 8.78e-151 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Stsc151882g00004 PHD 5.6e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151882g00004 - - gmx:100816912 837.795