Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151873g00005 ATGGAGAACGACACCGCCGCCACCAACACCAACGCCAACGCCACCGCCAAACTCGCAATTGCCGGAGCCAAATCAAACGGTCACAGCGAGGATGAGGAGCGCTCCAATTTCAACAACGGCGTCGAGGAGCACATGGCGGAGCAAGTGGATGAAGACGACGAAGAACAAGCAGAAGCAGAAGAAGACGGTGGCGGTGACGAAGGCGGTGAAGGGGAACAAACTGGATCTGCTTCTCGGCAACCTTCGAGAACCCCTTTCACCAATCTCAGCCAGGTCGATGCTGACCTCGCCCTCGCCCGAACCCTTCAGGAACAGGAAAGGGCATACATGATGCTTAGAATGAATAATGAAGGAAGTGACTATGGAAGTTGGGAAGCTGGGAGTTATTTGCATGATGACGGAGATGATTTTGATGATCTGCATGATGGAACTGATCTGGATGAGGATGATGATGAGGAGGAGGACGACGATGATGATGGTGAGGAGGATTATGAGAATGAAGATGAAGATGCATTTGATGTCCATGCTCATGATGATGCTGGAGAACATGATAATCCTAGCATTGAATTTGACCCTGATGTATTTTCAAGTGATGAAGCCTATGCAAGGGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTCCTGGCTCTTGCTGGGATAAATGATCGGGAGGCCGTGGACGCAGAGGAGCATGGTGCTAATTCTCAGTACCACATAATTAAGGGAATGCCTTCCATTTCAACTGCTGACAAAATAAACAAGGATGCATGGGAAGATGTTGATCCAGATGAACTTTCATATGAGGAACTTCTGGCCTTGGGTGAAGTAGTAGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCTGGTCTGCCTTCAATCAAGTACAAGACTGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATTTGCCGGATGGACTATGAGGATGATGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATCAATAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCTTCTGGGAGCAGCTAG 1092 0.4799 MENDTAATNTNANATAKLAIAGAKSNGHSEDEERSNFNNGVEEHMAEQVDEDDEEQAEAEEDGGGDEGGEGEQTGSASRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFDDLHDGTDLDEDDDEEEDDDDDGEEDYENEDEDAFDVHAHDDAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAVDAEEHGANSQYHIIKGMPSISTADKINKDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLAGLPSIKYKTGSDQHGSNDSCVICRMDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151873g00005 363 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 38 362 IPR043312 -
Stsc151873g00005 363 MobiDBLite consensus disorder prediction 46 68 - -
Stsc151873g00005 363 MobiDBLite consensus disorder prediction 117 167 - -
Stsc151873g00005 363 MobiDBLite consensus disorder prediction 1 91 - -
Stsc151873g00005 363 Pfam Ring finger domain 311 353 IPR001841 -
Stsc151873g00005 363 FunFam E3 ubiquitin ligase BIG BROTHER-related 279 360 - -
Stsc151873g00005 363 MobiDBLite consensus disorder prediction 73 91 - -
Stsc151873g00005 363 MobiDBLite consensus disorder prediction 26 40 - -
Stsc151873g00005 363 SUPERFAMILY RING/U-box 304 358 - -
Stsc151873g00005 363 MobiDBLite consensus disorder prediction 138 167 - -
Stsc151873g00005 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 360 IPR013083 -
Stsc151873g00005 363 MobiDBLite consensus disorder prediction 1 16 - -
Stsc151873g00005 363 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Stsc151873g00005 363 SMART ring_2 313 353 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151873g00005 Stsc-Chr151873 14968 18854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151873g00005 1 245 C3H Transcription Factor Family AT3G19910 43.254 6.30e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151873g00005 K19045 - gmx:100787418 428.328