Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151873g00001 ATGTCGTCCGGCGAAGCCGTCGTCGGCGGAGCTAAGCCCTACTTCTGCCACGTGTGCACTCGGAGAATAACTGTCTCCGATGAATCCGAGCCTTTCTGCCCGTTTTGCCTGCAAGGCTTCGTTGAAGAATACACCGATCCCAACCCTAACCCTAACCAAAACAACCCCTTCAGCTTCGGCTCCGATCCTTCCTCCGATGTTCCACTTCCCTTCCACCCTTTGTCTTTCCTCCCTTTCCTTCTATCCTCCGCCGCCGCCTCCTCCACCGCCATCGACCTCCAGAACCCTCGCTTCTTCTCCAGTTCCTCCGAATCCAGCCCCCGACCCCAGTTTGTTCAATCCGATATGTTCGACCCGTTTATGTTTCTCCAGAACCACCTCCAAGGGCTTCGCGCCGACGGAGCAAATGTACAATTCGAGATCAACCACCCTTCGGACCCAGGGTTTCGCCTTCCGGCGAACATCGGCGATTACTTCCTCGGTCCCGGCCTCGAGCAGTTGATTCAGCAGCTAGCCGAGAACGATCCCAACCGTTACGGTACCCCGCCGGCGTCGAAGACCGCCGTGGAGAATCTTCCGACGGTGACGGTGGACGACGAGTTGCTGAACTCAGAGCATAACGAGTGCGCGGTTTGCCAGGACGAGTTCGAGAAGGGGTCGCAGGTGAGGCAGATGCCATGCAAACACGTTTATCACGATGATTGCTTGCTTCCGTGGCTTCAACTGCACAATTCTTGCCCTGTTTGCCGGTATGAGTTGCCCACTGACGACCCTGATTATGAGAATCGGAATCGCCAGGGGGGCGACGGGGATGGTTCGAGGTCTGGCGGTGGCAGTGGCGGTGACGGTGACGGCGATGGAAGTGGCAGCGGTGAAGCTTCTGGGGGTAGACCTGTTCAGAGGACTTTTAGGATATCTTTGCGGTACCCGTTTGGTTCGGGTGGGTCTTCTCAGGAAAGTGGCGACAGAGGATGGGGAAATAGGCAAGAAGATTTGGATTGA 1002 0.5669 MSSGEAVVGGAKPYFCHVCTRRITVSDESEPFCPFCLQGFVEEYTDPNPNPNQNNPFSFGSDPSSDVPLPFHPLSFLPFLLSSAAASSTAIDLQNPRFFSSSSESSPRPQFVQSDMFDPFMFLQNHLQGLRADGANVQFEINHPSDPGFRLPANIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKTAVENLPTVTVDDELLNSEHNECAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDPDYENRNRQGGDGDGSRSGGGSGGDGDGDGSGSGEASGGRPVQRTFRISLRYPFGSGGSSQESGDRGWGNRQEDLD 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151873g00001 333 Pfam zinc-ribbon 13 44 IPR039525 GO:0061630
Stsc151873g00001 333 Pfam Ring finger domain 207 250 IPR001841 -
Stsc151873g00001 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 254 - -
Stsc151873g00001 333 SUPERFAMILY RING/U-box 188 257 - -
Stsc151873g00001 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 256 IPR013083 -
Stsc151873g00001 333 SMART ring_2 209 249 IPR001841 -
Stsc151873g00001 333 MobiDBLite consensus disorder prediction 254 268 - -
Stsc151873g00001 333 MobiDBLite consensus disorder prediction 253 333 - -
Stsc151873g00001 333 FunFam E3 ubiquitin-protein ligase RING1-like 170 256 - -
Stsc151873g00001 333 CDD RING-H2_RNF126-like 208 250 - -
Stsc151873g00001 333 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151873g00001 Stsc-Chr151873 3938 6226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151873g00001 153 265 C3H Transcription Factor Family AT5G01980 48.673 1.42e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151873g00001 K11982 - gmx:100785289 354.755