Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151872g00003 ATGAAAGCTGCTAAGAAGCTACACGAAACGGATCCAATGCAGAAGTCGAAGCAAGATCGCTACGCCCTTGGAACTTCCCTGCAATGGCTTGGTCCTCTTGTTGAAGTGATTAAGTTTTCAACAAAATCGATCGAGAGAGAGATCAACTCTGTTAATGACAATCTGTTGATTGATGTGTCAAGAAACAAGGCCTTGCATGGTGAACTAGTCAATCATTTCTACAACAGCGGCTTGCCTTCAATTCTCTCTGCTGCTACAAATCCAAGCTTGGACTACGGTTTCAAAGGCGTGGAAATTGCAATGGCTTCTTACTCCTCTGAGCTCCAATACCTTGCGAATCCGCCATATTTTCCATCTTCCGTTCCCTGTTGGGCTCGCTATGCTCACATCGCCGTTCTTAACCTGTTCTCCTGCACTGCCGTGAGTGAAACAGCGTGGCTGTGCCCGCGAAGCCCTGTTCTGTCTTCTTTGTTATGCCCTTTTTTTCGTACGTTCACTTTCACTTTGACACCTACTCTGTCTGAGACCATCCTCCCGTGCCCCTCCATGCTTTGTCCGCCATTTGAGTTCGGATCTGAAGGCACTGAAAAAGATCATCGAGGCTGTGTGGTTGGCGGATCCGCTGCCATCAGAGGAATCTATAACAACGGGCAAGTTCAAGGGTAA 666 0.4775 MKAAKKLHETDPMQKSKQDRYALGTSLQWLGPLVEVIKFSTKSIEREINSVNDNLLIDVSRNKALHGELVNHFYNSGLPSILSAATNPSLDYGFKGVEIAMASYSSELQYLANPPYFPSSVPCWARYAHIAVLNLFSCTAVSETAWLCPRSPVLSSLLCPFFRTFTFTLTPTLSETILPCPSMLCPPFEFGSEGTEKDHRGCVVGGSAAIRGIYNNGQVQG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151872g00003 221 PANTHER HISTIDINE AMMONIA-LYASE 68 114 IPR001106 -
Stsc151872g00003 221 Gene3D Fumarase/aspartase (Central domain) 1 67 - -
Stsc151872g00003 221 Gene3D Fumarase/aspartase (Central domain) 68 114 - -
Stsc151872g00003 221 SUPERFAMILY L-aspartase-like 2 121 IPR008948 GO:0003824
Stsc151872g00003 221 Pfam Aromatic amino acid lyase 68 115 IPR001106 -
Stsc151872g00003 221 Pfam Aromatic amino acid lyase 13 67 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151872g00003 Stsc-Chr151872 8591 10068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151872g00003 1 114 Monolignol Biosynthesis Gene Families AT2G37040 63.448 1.61e-52 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151872g00003 K10775 - csv:101222092 181.8