Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151871g00003 ATGTATACTTTCACAAAGGTAAATCATCTTTCTTTTGTTTGTTATCTAACTTTTGCCTCTTACTATTATAAACCTTTTCCCTGTTTCAGAGATCCCCGTAACAGCAGGGCTGCTCTGTTTGATGGCATTGAGGAGGGAGGCATCCGAGCATCATCACTTTACTCCTCCTATAATGAAATTGATGAACAAGATAATGATCGAGCAATGGGTGGATTGCATGATAGAGTCAGTCTGCTGAAAAAAATCTCAAGTGATATACATGAGGAGGTGGATAGTCATAACCGCATGCTGGACCGCATGGGCAATGACATGGATTCTTCAAGAGGAGTTCTTTCAGGCACTATGGACAAGTTCAAAATGGTCTTTGAGAAAAAATCCAGCCGCAGAACGTGTTCGCTTATAGCATCATTTGTTGTTCTTTTTCTTATAATATACTATTTGACTCGGTAA 450 0.3956 MYTFTKVNHLSFVCYLTFASYYYKPFPCFRDPRNSRAALFDGIEEGGIRASSLYSSYNEIDEQDNDRAMGGLHDRVSLLKKISSDIHEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFEKKSSRRTCSLIASFVVLFLIIYYLTR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151871g00003 149 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 59 121 IPR000727 -
Stsc151871g00003 149 FunFam bet1-like SNARE 1-1 66 130 - -
Stsc151871g00003 149 SMART tSNARE_6 54 121 IPR000727 -
Stsc151871g00003 149 CDD SNARE_Bet1 62 119 IPR039899 -
Stsc151871g00003 149 Gene3D - 66 130 - -
Stsc151871g00003 149 SUPERFAMILY SNARE fusion complex 56 121 - -
Stsc151871g00003 149 PANTHER GOLGI SNARE BET1-RELATED 33 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151871g00003 Stsc-Chr151871 14922 15894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151871g00003 63 148 SNARE and Associated Proteins AT1G28490 25.581 3.44e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151871g00003 K08504 - gmx:100500329 193.356