Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151871g00002 ATGAATTCCAGAAGAGATCCCCGTAACAGCAGGGCTGCTCTGTTTGATGGCATTGAGGAGGGAGGCATCCGAGCATCATCACTTTACTCCTCCTATAATGAAATTGATGAACAAGATAATGATCGAGCAATGGGTGGATTGCATGATAGAGTCAGTCTGCTGAAAAAAATCTCAAGTGATATACATGAGGAGGTGGATAGTCATAACCGCATGCTGGACCGCATGGGCAATGACATGGATTCTTCAAGAGGAGTTCTTTCAGGCACTATGGACAAGTTCAAAATGGTCTTTGAGAAAAAATCCAGCCGCAGAACGTGTTCGCTTATAGCATCATTTGTTGTTCTTTTTCTTATAATATACTATTTGACTCGGTAA 375 0.4187 MNSRRDPRNSRAALFDGIEEGGIRASSLYSSYNEIDEQDNDRAMGGLHDRVSLLKKISSDIHEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFEKKSSRRTCSLIASFVVLFLIIYYLTR 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151871g00002 124 SMART tSNARE_6 29 96 IPR000727 -
Stsc151871g00002 124 SUPERFAMILY SNARE fusion complex 31 96 - -
Stsc151871g00002 124 FunFam bet1-like SNARE 1-1 41 105 - -
Stsc151871g00002 124 Gene3D - 41 105 - -
Stsc151871g00002 124 CDD SNARE_Bet1 37 94 IPR039899 -
Stsc151871g00002 124 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 34 96 IPR000727 -
Stsc151871g00002 124 PANTHER GOLGI SNARE BET1-RELATED 8 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151871g00002 Stsc-Chr151871 14922 17603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151871g00002 38 123 SNARE and Associated Proteins AT1G28490 25.581 1.16e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151871g00002 K08504 - pop:7471984 200.675