Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151871g00001 ATGGAATTCTACAATAACCTAGAAGACTACTCGAAGAGTTCGTCAAGCGAAGAAACAGATCGATCGTCGTATGAGCAAAACGATCAAGACATGGGGACGGGAAGATCCTACGAGTGTGTGTTTTGCAAAAGGGGATTCACCACAGCACAAGCTTTGGGTGGACACATGAACATTCATAGAAAAGATAGAGCCAATAACAAAGGCAAAATTCCACCTTCTAGTTCAAGCAAGGTTGATGATGAGAGCTACTATGCAGATCTAGGGCACTATTCATCACCAATTCCAAGCTATCTTGCAAGAAATGGAGATTATCATCATCATGAGGTAGATAATAATAATAACAACAACCCTTACCATCAATTTTATTTTCCTCCATCACACACTAATTCCCATGTCCAATATAATGAGATTTTGTTTATAGAAAACCAAAGGGAAAATGGGAAATTGTTTGGACAAGATTGGAGGCAAAGAGGTAATAATAATTTGAGCTTGTACACTAATAATAATCCAATATGTGTACATGAGAATAATAGTGACAAGATAAAAGATAAGGGTGAAGATGGTGGTTTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 603 0.3748 MEFYNNLEDYSKSSSSEETDRSSYEQNDQDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKGKIPPSSSSKVDDESYYADLGHYSSPIPSYLARNGDYHHHEVDNNNNNNPYHQFYFPPSHTNSHVQYNEILFIENQRENGKLFGQDWRQRGNNNLSLYTNNNPICVHENNSDKIKDKGEDGGLDLELRLGHYP 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151871g00001 200 Gene3D Classic Zinc Finger 11 87 - -
Stsc151871g00001 200 MobiDBLite consensus disorder prediction 1 31 - -
Stsc151871g00001 200 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Stsc151871g00001 200 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Stsc151871g00001 200 PANTHER OS07G0101800 PROTEIN 13 198 - -
Stsc151871g00001 200 MobiDBLite consensus disorder prediction 57 80 - -
Stsc151871g00001 200 SUPERFAMILY beta-beta-alpha zinc fingers 35 63 IPR036236 -
Stsc151871g00001 200 Pfam C2H2-type zinc finger 37 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151871g00001 Stsc-Chr151871 8172 9399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151871g00001 16 136 C2H2 Transcription Factor Family AT3G09290 34.921 1.35e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151871g00001 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151871g00001 - - ahf:112718298 318.931