Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151865g00001 ATGGCCAACAAGATCGCTCTCGGAACCACCCGAGAGGCCACCCAGCCAGATTGCATTCAGGCCCTCGTCGTTGAGTTCATAGCCACCTTCCTCTTTGTATTCGCCGGCGTTGGTTCCGCCATGGCCGCTGACAAGCTGAGTGGAGATGCATTGGTGGGGTTGTTTGTGGTGGCCGTGGCACATGCACTTGTGGTGGCTGTCATGATTTCAGCCGGTCACATCTCCGGTGGCCACCTCAACCCTGCTGTGACCCTTGCACTGCTCGTCGGCGGGCACATCACGGTGGTCCGATCGGTCCTTTATTGGATAGATCAGTTGGTAGCATCTGCAGCTGCTTCTTACCTTCTTTACTACCTTTCCGGAGGACTGGCAACTCCAGTTCACACACTAGCAAGTGGGGTTGGGTACGCCCAAGGAGTGATTTGGGAAATAGTGTTGACTTTCTCATTGTTGTTCGCTGTCTATGCTACTATGGTAGACCCTAAGAAAGGTGCTCTCGCTGGACATGGGCCCACACTTGTTGGGTTCGTTGTTGGGGCCAACATTCTGGCTGGTGGGGCCTTCTCTGCGGCTTCAATGAACCCAGCAAGGTCTTTTGGGCCTGCATTGGTTGCTGGTAACTGGACCGATCATTGGGTTTATTGGGTTGGGCCTCTCATTGGTGGAGGCCTTGCAGGTTTCATATATGAACATTTCTTCATTGACCGTACCCATGTTCTTATCCCTCGTGATGAAGAAAACTAA 744 0.5296 MANKIALGTTREATQPDCIQALVVEFIATFLFVFAGVGSAMAADKLSGDALVGLFVVAVAHALVVAVMISAGHISGGHLNPAVTLALLVGGHITVVRSVLYWIDQLVASAAASYLLYYLSGGLATPVHTLASGVGYAQGVIWEIVLTFSLLFAVYATMVDPKKGALAGHGPTLVGFVVGANILAGGAFSAASMNPARSFGPALVAGNWTDHWVYWVGPLIGGGLAGFIYEHFFIDRTHVLIPRDEEN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151865g00001 247 Pfam Major intrinsic protein 14 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151865g00001 247 SUPERFAMILY Aquaporin-like 12 240 IPR023271 -
Stsc151865g00001 247 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151865g00001 247 PRINTS Major intrinsic protein family signature 212 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151865g00001 247 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151865g00001 247 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151865g00001 247 PRINTS Major intrinsic protein family signature 142 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151865g00001 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151865g00001 247 CDD MIP 20 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc151865g00001 247 ProSitePatterns MIP family signature. 78 86 IPR022357 -
Stsc151865g00001 247 Gene3D Glycerol uptake facilitator protein. 3 242 IPR023271 -
Stsc151865g00001 247 FunFam Probable aquaporin TIP1-1 3 245 - -
Stsc151865g00001 247 PANTHER AQUAPORIN-8 5 237 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151865g00001 Stsc-Chr151865 8326 10313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151865g00001 3 246 Major Intrinsic Protein MIP AT2G25810 78.279 1.55e-129 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151865g00001 K09873 - gmx:100811447 414.075