Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151848g00004 ATGGAAAATCAAGACCCACCAAATCCACCACCACCACCATTATTACTATTGCCAACACCCCAAGACAACCACCACAACAACAACAATATTCCCTTTTTACCCTTCACAACCCTACCTTCTTCCATGCTTCATCAAAACCCTTTGCAAATGGAACCTCAATCTCAACCTAATAATGATAATAACAACAATAATACCCTTGGTTGTGACATCAATGATGATTATTATTGGGGCAACATTAATTATGTTTTGTCCGCTGTCGGCGGCGGCCACAACAACGCTAGTGCTACCTTTCTTTGTGATGCCAAGGAAACAACAACAACCGCGATAGAATGCGCTTCTTCTTTTTCTTCTTCTCCTTCTTTTAATATGCCCGAAAATGTTAGCGAAACTTGTGACGCAGAGGAAAATGGTGAGAAGGAGAAGAAGAAAGTGGTTGGAAGAGTGAAGAAGGCCACAAGAGTGCCAAGGTTTGCATTCCAAACAAGAAGTGTTGATGATCTTTTGGATGATGGTTATCGCTGGAGGAAGTATGGCCAGAAAGCAGTGAAAAATAGCACACATCCTAGAAGCTACTACCGTTGCACGCATCACACATGCAATGTGAAGAAACAAGTGCAGAGGCTGTCAAAAGACACAAGCATTGTGGTCACAACCTACGAGGGAATCCATAACCATCCTTGCGAGAAGCTTATGGAAACTTTGACCCCTCTTCTCAAACAGATTCAGTTTCTTGCTACCATCTAA 744 0.4247 MENQDPPNPPPPPLLLLPTPQDNHHNNNNIPFLPFTTLPSSMLHQNPLQMEPQSQPNNDNNNNNTLGCDINDDYYWGNINYVLSAVGGGHNNASATFLCDAKETTTTAIECASSFSSSPSFNMPENVSETCDAEENGEKEKKKVVGRVKKATRVPRFAFQTRSVDDLLDDGYRWRKYGQKAVKNSTHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLATI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151848g00004 247 ProSiteProfiles WRKY domain profile. 163 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151848g00004 247 SMART WRKY_cls 168 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151848g00004 247 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 229 IPR044810 GO:0003700
Stsc151848g00004 247 Gene3D WRKY domain 153 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151848g00004 247 MobiDBLite consensus disorder prediction 20 40 - -
Stsc151848g00004 247 FunFam WRKY transcription factor 57 154 228 - -
Stsc151848g00004 247 MobiDBLite consensus disorder prediction 1 18 - -
Stsc151848g00004 247 SUPERFAMILY WRKY DNA-binding domain 163 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151848g00004 247 Pfam WRKY DNA -binding domain 169 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151848g00004 247 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151848g00004 Stsc-Chr151848 19628 21085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151848g00004 137 247 WRKY Transcription Factor Family AT5G41570 71.171 6.14e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc151848g00004 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151848g00004 - - aip:107638083 356.681