Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151843g00001 ATGGACAAGGAAGAAGAACATGTCCCTTTAGAGAGCCAAACTCAACCAACTACCTCCTCCTCCTCTTTTACCATTATACCCTCCACGTCCTCGTCTTCCTCCTCCTCCTCATCCGCGTCCGCCTTGGATGCCAAGAATAAGAAGAAGAAGGTTTTGAAGAGAAGCAATGATGGGAGGCACCACCCAACTTATAGAGGAGTACGTATGCGCCAATGGGGAAAATGGGTATCCGAAATTCGAGAGCCTAGGAAGAAATCTAGGATTTGGCTTGGAACTTTTCCCACGGCTGAGATGGCAGCTCGAGCCCATGATGTGGCGGCTCTATCAATTAAGGGAAGCTCAACTTACCTTAATTTTCCTGAGCTAGTACCCAAATTGCCTCGTCCCGCTAGCAATTCTCCTAAGGACATACAAGCGGCTGCGGCCAAAGCCGCCGTCATGAATTATCACCATGAGAGCCATGACACAGAATTGGAAGCAGAAGCTGAGTCCGAGCTGAGCCAAGTCGAGTCCTTGTCAAGCGAAACTCAACTACCATCAAGTTCTATTACTTCATCATCATTATTGAAGGGTGAGGATGACATGTTCTTGAATCTCCCTGATCTCTCATTAGACTTGAATCATAGCGCCGATGAGTTTCATTACCCATCATCGGCTTGGCTTTTAGCCGGAGCCGGAGCCGGAGCCGAAGGCGAGCACATAGACTTAGGTTTCCGGCTTGAAGAACCGTTCATATGGGAGTCCTATTAA 750 0.484 MDKEEEHVPLESQTQPTTSSSSFTIIPSTSSSSSSSSSASALDAKNKKKKVLKRSNDGRHHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSTYLNFPELVPKLPRPASNSPKDIQAAAAKAAVMNYHHESHDTELEAEAESELSQVESLSSETQLPSSSITSSSLLKGEDDMFLNLPDLSLDLNHSADEFHYPSSAWLLAGAGAGAEGEHIDLGFRLEEPFIWESY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151843g00001 249 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Stsc151843g00001 249 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Stsc151843g00001 249 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Stsc151843g00001 249 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Stsc151843g00001 249 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Stsc151843g00001 249 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Stsc151843g00001 249 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Stsc151843g00001 249 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 202 - -
Stsc151843g00001 249 MobiDBLite consensus disorder prediction 11 42 - -
Stsc151843g00001 249 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Stsc151843g00001 249 MobiDBLite consensus disorder prediction 1 66 - -
Stsc151843g00001 249 FunFam Ethylene-responsive transcription factor 2 63 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151843g00001 Stsc-Chr151843 8280 9029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151843g00001 53 245 AP2-EREBP Transcription Factor Family AT2G44940 52.558 4.91e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151843g00001 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151843g00001 - - gmx:100101914 246.128