Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151841g00001 ATGTCGATGGCTGGTTTGGATTTAGGAACAGCATCACGCTTCGTTCAAAATCTTCACAGACCAGACTTACACCTTCAACAACAACACCACTACCAAGATTCTCAAGAACAGCAACAACACACACCAGATCGTGCACAAGCACCTCAGTTCTCCGGCGACGAAGATGATACAAGCCAAGGTGGCGGCAGCGGTAGCGGCGGTGGCGGTGGATTCGAGCTCGGCTCTGGCTCCGGAGGCAGACGCCCCCGAGGCCGTCCGCCGGGCTCGAAGAACAAGCCGAAACCGCCGGTCATCATCACAAGAGAGAGCGCCAACACTTTAAGAGCTCACATCCTCGAAGTAGCAAGCGGCTCCGACGTCTTTGACAGCGTCGCCACCTACGCGCGGCGGCGCCAGCGCGGGATCTGCATCTTGAGCGGCAGTGGCACCGTCACCAATGTCACTATCCGGCAGCCAGCTGCGGCTGGCTCCGTCGTGACTCTCCAGGGAAGGTTCGAGATCCTGTCGCTCTCCGGCTCCTTCCTGCCGCCGCCTGCTCCGCCAGGCGCCACCAGCCTCAGCATATACCTAGCAGGCGGTCAGGGACAGGTCGTCGGAGGGAACGTAGTTGGAGAGCTGATCGCGGCGGGGCCAGTGATCGTGATCGCATCGTCGTTCACGAACGTGGCGTACGAGCGGCTGCCGTTGGAGGAGGAGGAGCAGCAGCTGCAGATTCAGCCGCCGGGGAGTGCGGCGGGTGGAAGTCAGGGCTCCGGTGGCGTCGGTAACAACAGCGCGTTTCCAGATCCTTCTTCGGGTTTGCCGTTCTTTAATTTGCCGCTTGGTATGCAAAATAACAACGTTCAGTTGCCTGCTGTTGACGGTTACTCTTCTGGTCCACGCCCTCCGTTTTAA 894 0.5962 MSMAGLDLGTASRFVQNLHRPDLHLQQQHHYQDSQEQQQHTPDRAQAPQFSGDEDDTSQGGGSGSGGGGGFELGSGSGGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGSDVFDSVATYARRRQRGICILSGSGTVTNVTIRQPAAAGSVVTLQGRFEILSLSGSFLPPPAPPGATSLSIYLAGGQGQVVGGNVVGELIAAGPVIVIASSFTNVAYERLPLEEEEQQLQIQPPGSAAGGSQGSGGVGNNSAFPDPSSGLPFFNLPLGMQNNNVQLPAVDGYSSGPRPPF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151841g00001 297 MobiDBLite consensus disorder prediction 236 262 - -
Stsc151841g00001 297 MobiDBLite consensus disorder prediction 30 64 - -
Stsc151841g00001 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 237 - -
Stsc151841g00001 297 ProSiteProfiles PPC domain profile profile. 104 241 IPR005175 -
Stsc151841g00001 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 252 IPR014476 GO:0003680
Stsc151841g00001 297 MobiDBLite consensus disorder prediction 232 262 - -
Stsc151841g00001 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 221 IPR005175 -
Stsc151841g00001 297 Gene3D - 107 241 - -
Stsc151841g00001 297 FunFam AT-hook motif nuclear-localized protein 107 234 - -
Stsc151841g00001 297 CDD DUF296 108 191 IPR005175 -
Stsc151841g00001 297 MobiDBLite consensus disorder prediction 27 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151841g00001 Stsc-Chr151841 2455 3348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151841g00001 3 297 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 63.608 1.59e-91 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151841g00001 - - pvu:PHAVU_003G230600g 323.939