Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151832g00001 GCATGGACTGAAGAAGAGGATCACTTGCTTAAGAAATGCATACAACAATATGGTGAAGGCAAATGGCATAGGGTTCCTCTATTGGCTGGTCTCAACAGGTGCCGAAAGAGCTGTAGGCTAAGATGGCTGAACTACCTGCGTCCTAACATCAAAAGAGGAAATTTTGCAGAGGAAGAAGTGGAGATGATTGTTAAACTCCACAAATTATTGGGAAACAGGTGGTCACTGATTGCAGGAAGGCTACCCGGAAGGACTGCGAACGATGTGAAGAACTATTGGAACTGCCATCTCAGCAAGAAACTCAGTGCAATAGAAGGCGAAGACAGATCACAAGCAACCAAAAACGTTGAACTCATCAGGCCACAGGCTAGAAACATTGGTAGCACTTCAAGCTCCGTCAAGAGAAGAAGGGGAATTCAGGGCGAGTCGTCCTCGCCCCCGGTCGCGACCGACTTTCTTGCTCAACAAGAAATCAGTGGCATGTCGTCCACAATGACATTCGATGCTGAGGGACAAAGCGATAATAACATGCTGGAATCGCAGCTAGAGAACAACGTTAACATATACTCTTGCTTGGATCAGCAGGACATTGTTGGCGAGTTGCCGATGGATTTCCCGTTCGAAGAAGAAGGAGTGGAAGCGATGATCAACGGCGGCGAAGGTAGTAGCGGGCAGTGGGATTGGGATGACTTGCTTTTAGACATGGACCTATATAAAGATTTTGCGAGTAATTAG 735 0.4707 AWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLSAIEGEDRSQATKNVELIRPQARNIGSTSSSVKRRRGIQGESSSPPVATDFLAQQEISGMSSTMTFDAEGQSDNNMLESQLENNVNIYSCLDQQDIVGELPMDFPFEEEGVEAMINGGEGSSGQWDWDDLLLDMDLYKDFASN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151832g00001 244 Gene3D - 54 121 - -
Stsc151832g00001 244 MobiDBLite consensus disorder prediction 127 149 - -
Stsc151832g00001 244 SMART sant 51 99 IPR001005 -
Stsc151832g00001 244 SMART sant 1 48 IPR001005 -
Stsc151832g00001 244 FunFam Myb transcription factor 1 51 - -
Stsc151832g00001 244 Pfam Myb-like DNA-binding domain 52 94 IPR001005 -
Stsc151832g00001 244 Pfam Myb-like DNA-binding domain 1 46 IPR001005 -
Stsc151832g00001 244 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 168 - -
Stsc151832g00001 244 SUPERFAMILY Homeodomain-like 2 93 IPR009057 -
Stsc151832g00001 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Stsc151832g00001 244 CDD SANT 54 97 IPR001005 -
Stsc151832g00001 244 Gene3D - 1 51 - -
Stsc151832g00001 244 ProSiteProfiles Myb-like domain profile. 1 46 IPR001005 -
Stsc151832g00001 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 101 IPR017930 -
Stsc151832g00001 244 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Stsc151832g00001 244 CDD SANT 1 46 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151832g00001 Stsc-Chr151832 9 3759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151832g00001 1 213 MYB Transcription Factor Family AT1G66370 43.515 1.84e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151832g00001 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151832g00001 K09422 - gmx:100798101 322.013