Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151829g00002 ATGAATCGTTCTTGGTTCCCTCGAACGCCCTATGTAATTGGACACAAAATAACATGTTCTTGCATGAAATCTTCTCTTCACATAGACCAAGTCGCAAGAGAAACGATTATTCTAAGTTATGATGAAGAATGTGACTCCAACATGTGGGAGATTAACGTGAACCTTCATGTTACCATACATGTTCTTACTTGTAATGGTAATAATAATAATAATGCTATTGTTGTGGCAACCAAACTCGTGAATCTGTTGCCGAGACCAAAAATTGAAGAATGTCGTGATTTTGTGGAGCAACAATGTGCTATTTGCTTGGAAGAGTTGTGGCAAAATATTGATGGTTCAAGTGCAGAGGTTGTTGGTATAAATTGCTCACATGTTTTCCATGAACGTTGTATTTTTCGATGGCTCATGCGTTGTATCAACCTTAAAGCATCTTATACTTGTCCTTTATGTCGCGACTCCATTATTGATTCAACTTCAGAAGGAGATGGAGGTTTGAGGCATGATCACTAG 510 0.3804 MNRSWFPRTPYVIGHKITCSCMKSSLHIDQVARETIILSYDEECDSNMWEINVNLHVTIHVLTCNGNNNNNAIVVATKLVNLLPRPKIEECRDFVEQQCAICLEELWQNIDGSSAEVVGINCSHVFHERCIFRWLMRCINLKASYTCPLCRDSIIDSTSEGDGGLRHDH 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151829g00002 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
Stsc151829g00002 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 82 158 - -
Stsc151829g00002 169 CDD RING-H2 99 151 - -
Stsc151829g00002 169 ProSiteProfiles Zinc finger RING-type profile. 99 151 IPR001841 -
Stsc151829g00002 169 SMART ring_2 99 150 IPR001841 -
Stsc151829g00002 169 SUPERFAMILY RING/U-box 84 157 - -
Stsc151829g00002 169 Pfam Ring finger domain 98 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151829g00002 Stsc-Chr151829 9368 9877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151829g00002 82 156 C3H Transcription Factor Family AT4G12190 38.462 1.43e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151829g00002 - K11982 adu:110273516 125.946